Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   AMD27_RS13810 Genome accession   NZ_CP015110
Coordinates   2888267..2889148 (-) Length   293 a.a.
NCBI ID   WP_067661557.1    Uniprot ID   A0A143G6I5
Organism   Acinetobacter sp. TGL-Y2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2883267..2894148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD27_RS13785 (AMD27_13790) miaB 2883322..2884779 (+) 1458 WP_067661548.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  AMD27_RS13790 (AMD27_13795) - 2884819..2885907 (+) 1089 WP_067661550.1 PhoH family protein -
  AMD27_RS13795 (AMD27_13800) ybeY 2885925..2886410 (+) 486 WP_067661551.1 rRNA maturation RNase YbeY -
  AMD27_RS13800 (AMD27_13805) - 2886700..2887803 (+) 1104 WP_067661553.1 mechanosensitive ion channel family protein -
  AMD27_RS13805 (AMD27_13810) - 2887803..2888105 (+) 303 WP_067661555.1 antibiotic biosynthesis monooxygenase family protein -
  AMD27_RS13810 (AMD27_13815) tonB2 2888267..2889148 (-) 882 WP_067661557.1 energy transducer TonB Machinery gene
  AMD27_RS13815 (AMD27_13820) - 2889381..2890061 (+) 681 WP_067661559.1 hypothetical protein -
  AMD27_RS13820 (AMD27_13825) - 2890190..2890903 (+) 714 WP_067661561.1 DUF3108 domain-containing protein -
  AMD27_RS13825 (AMD27_13830) - 2890986..2891561 (+) 576 WP_067661563.1 xanthine phosphoribosyltransferase -
  AMD27_RS13830 (AMD27_13835) - 2891878..2892252 (+) 375 WP_067661565.1 hypothetical protein -
  AMD27_RS13835 (AMD27_13840) wrbA 2892360..2892956 (-) 597 WP_067661567.1 NAD(P)H:quinone oxidoreductase -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33488.35 Da        Isoelectric Point: 9.4030

>NTDB_id=176718 AMD27_RS13810 WP_067661557.1 2888267..2889148(-) (tonB2) [Acinetobacter sp. TGL-Y2]
MIKKMIAVPKQFHQWWQDPLFVMAVSTAVIVHLIFLSLQFAMPQEHDTASKDIAVTLRPSTEKIQAADFLAQDDQKGSGT
FREAHRMSSDMPAQADDLSAGEQQLQALEQIQQKRELKFEEKVLMTVLSWQKQTELSERKKAMEELNSQFQAKAAMVASL
EAQYLKKQQNFSRQQKIKTVDGVHAKQDASAGYLDKFREKVEVYGNRYYPEQAKQQRLAGEVRLMVILNQNGGIRAIRLI
ESSGYSILDEAAKNSVRKGAPFGVFDTKMKDISELRIIRTWKFDPADAEFEVR

Nucleotide


Download         Length: 882 bp        

>NTDB_id=176718 AMD27_RS13810 WP_067661557.1 2888267..2889148(-) (tonB2) [Acinetobacter sp. TGL-Y2]
ATGATTAAAAAAATGATTGCTGTTCCAAAGCAGTTTCATCAGTGGTGGCAAGATCCACTGTTTGTGATGGCGGTTTCAAC
TGCGGTTATTGTGCACCTGATCTTTTTGTCATTGCAATTCGCGATGCCTCAAGAACACGATACCGCTAGTAAAGACATTG
CAGTGACTTTACGTCCAAGCACGGAAAAAATTCAAGCGGCTGACTTTTTGGCGCAAGATGACCAGAAAGGAAGTGGTACT
TTTCGAGAAGCGCATCGTATGTCATCGGATATGCCCGCGCAAGCCGATGATCTCAGTGCAGGGGAGCAGCAGCTTCAAGC
ACTGGAGCAAATTCAGCAAAAGCGTGAACTGAAGTTTGAAGAGAAGGTTTTAATGACAGTGCTCAGCTGGCAAAAGCAGA
CGGAACTGAGTGAACGTAAAAAAGCCATGGAAGAACTCAACAGTCAATTCCAAGCCAAAGCAGCCATGGTGGCAAGTTTA
GAGGCACAATATTTAAAGAAGCAGCAAAACTTTAGTCGCCAACAAAAAATTAAAACGGTGGATGGAGTACACGCCAAGCA
AGATGCCTCGGCAGGCTACCTCGATAAATTTCGTGAAAAAGTTGAAGTCTATGGCAATCGTTATTATCCAGAACAAGCCA
AGCAACAGCGTTTGGCAGGCGAAGTACGCTTGATGGTGATTTTAAATCAAAATGGGGGTATTCGTGCGATTCGTTTGATT
GAAAGTTCAGGATATTCTATTTTGGATGAAGCAGCGAAAAACTCCGTGCGTAAAGGTGCGCCGTTTGGTGTATTTGATAC
TAAGATGAAAGATATTTCAGAGCTTCGTATTATTCGAACATGGAAGTTTGATCCTGCGGATGCAGAGTTTGAAGTTCGCT
AG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(206-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A143G6I5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

69.283

100

0.693

Multiple sequence alignment