Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   BUN12_RS11250 Genome accession   NZ_CP018902
Coordinates   2153767..2154642 (-) Length   291 a.a.
NCBI ID   WP_013353397.1    Uniprot ID   A0A9P1JJW3
Organism   Bacillus amyloliquefaciens strain HK1     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2148767..2159642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUN12_RS11215 (BUN12_2197) - 2148955..2149431 (+) 477 WP_013353390.1 Na+/H+ antiporter subunit E -
  BUN12_RS11220 (BUN12_2198) - 2149431..2149715 (+) 285 WP_013353391.1 Na(+)/H(+) antiporter subunit F1 -
  BUN12_RS11225 (BUN12_2199) mnhG 2149699..2150073 (+) 375 WP_013353392.1 monovalent cation/H(+) antiporter subunit G -
  BUN12_RS11230 (BUN12_2200) - 2150113..2150496 (-) 384 WP_013353393.1 hotdog fold thioesterase -
  BUN12_RS11235 (BUN12_2201) comA 2150518..2151162 (-) 645 WP_013353394.1 response regulator transcription factor Regulator
  BUN12_RS11240 (BUN12_2202) comP 2151243..2153549 (-) 2307 WP_013353395.1 sensor histidine kinase Regulator
  BUN12_RS11245 (BUN12_2203) comX 2153572..2153748 (-) 177 WP_013353396.1 competence pheromone ComX -
  BUN12_RS11250 (BUN12_2204) comQ 2153767..2154642 (-) 876 WP_013353397.1 polyprenyl synthetase family protein Regulator
  BUN12_RS11255 (BUN12_2205) degQ 2154794..2154934 (-) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  BUN12_RS11265 (BUN12_2206) - 2155399..2155740 (+) 342 WP_013353399.1 hypothetical protein -
  BUN12_RS11270 (BUN12_2207) - 2155747..2156970 (-) 1224 WP_013353400.1 EAL and HDOD domain-containing protein -
  BUN12_RS11275 (BUN12_2208) - 2157100..2158566 (-) 1467 WP_088030648.1 nicotinate phosphoribosyltransferase -
  BUN12_RS11280 (BUN12_2209) - 2158584..2159135 (-) 552 WP_013353402.1 cysteine hydrolase family protein -
  BUN12_RS11285 (BUN12_2210) - 2159216..2159611 (-) 396 WP_013353403.1 YueI family protein -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33461.48 Da        Isoelectric Point: 5.9224

>NTDB_id=176705 BUN12_RS11250 WP_013353397.1 2153767..2154642(-) (comQ) [Bacillus amyloliquefaciens strain HK1]
MCLDAETIKGKMKEIVGDKVDNLHLEETLLTFINEKKHFSFGVLAFQHYVAFKGTHSSEITLLAAGIELLILAFDIFDDI
EDEDNFNKAWMQTDHAISLNAATSLYSISLQAICELESNIDFSRLAIKYALNAMQGQHNDLRNFPETEEECLHMIKQKSG
SLTAMSAVLGAMLASGEFNATIENYSYKIGVIKQIENDYYGLFDKSRSDIKKKKRTLINLFLNRQFNSASKKVLNMMNSK
NSYYSLISDRNYFEELLCKAGVRQYVLMLIKIYENEIYNEMEKLNIRIKLW

Nucleotide


Download         Length: 876 bp        

>NTDB_id=176705 BUN12_RS11250 WP_013353397.1 2153767..2154642(-) (comQ) [Bacillus amyloliquefaciens strain HK1]
ATGTGTTTAGATGCCGAAACGATTAAAGGGAAGATGAAGGAAATTGTTGGGGATAAAGTCGATAATCTACATTTAGAAGA
GACTCTTTTGACCTTCATTAATGAAAAGAAGCACTTTTCATTCGGTGTCCTTGCTTTCCAGCATTATGTTGCTTTTAAGG
GTACACATTCCTCGGAAATCACACTACTGGCCGCTGGAATTGAACTTTTAATTTTAGCTTTTGATATTTTTGACGATATT
GAAGATGAAGATAACTTTAATAAGGCATGGATGCAAACTGACCATGCTATATCCCTGAATGCGGCTACTTCTCTGTATTC
AATAAGCCTGCAAGCCATTTGTGAGCTTGAATCAAACATCGATTTTTCAAGACTTGCAATAAAATATGCCCTAAATGCAA
TGCAAGGTCAGCATAATGATCTAAGAAATTTCCCGGAGACTGAAGAAGAGTGTTTACATATGATAAAACAGAAATCAGGA
TCGTTAACTGCAATGTCAGCTGTTTTAGGGGCGATGCTTGCAAGTGGTGAATTTAACGCAACAATTGAGAATTATTCTTA
TAAAATTGGCGTTATTAAACAAATTGAAAATGACTATTATGGTTTATTTGATAAAAGCCGTAGTGATATAAAGAAGAAGA
AAAGAACTTTGATAAACTTGTTTTTAAATCGTCAGTTTAATAGTGCCTCAAAAAAAGTTTTAAATATGATGAATTCTAAA
AACAGCTATTACTCTCTCATATCGGACAGAAATTATTTTGAAGAATTGCTGTGTAAAGCAGGAGTCAGACAATATGTTTT
AATGTTAATTAAAATATATGAAAATGAAATTTATAACGAAATGGAAAAGTTGAACATAAGAATTAAACTATGGTGA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(44-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JJW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

46.182

94.502

0.436