Detailed information NTG0176686

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: BUN12_RS08990
• Genome accession: NZ_CP018902
• Coordinates: 1725022..1727400 (-)
• Length: 792 a.a.
• NCBI ID: WP_013353018.1
• Uniprot ID: A0A9P1JIN2
• Organism: Bacillus amyloliquefaciens strain HK1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1720022..1732400

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BUN12_RS08955 (BUN12_1762)	-	1721109..1721837 (+)	729	WP_013353013.1	amino acid ABC transporter ATP-binding protein	-
BUN12_RS08960 (BUN12_1763)	-	1721858..1722685 (+)	828	WP_013353014.1	transporter substrate-binding domain-containing protein	-
BUN12_RS08965 (BUN12_1764)	-	1722743..1723387 (+)	645	WP_013353015.1	amino acid ABC transporter permease	-
BUN12_RS08970 (BUN12_1765)	-	1723406..1724062 (+)	657	WP_013353016.1	amino acid ABC transporter permease	-
BUN12_RS08975 (BUN12_1766)	-	1724096..1724227 (-)	132	WP_003152741.1	YrzQ family protein	-
BUN12_RS08980 (BUN12_1767)	-	1724249..1724440 (-)	192	WP_003152738.1	hypothetical protein	-
BUN12_RS08985 (BUN12_1768)	-	1724453..1724911 (-)	459	WP_041481661.1	hypothetical protein	-
BUN12_RS08990 (BUN12_1769)	recD/recD2/recDB	1725022..1727400 (-)	2379	WP_013353018.1	ATP-dependent RecD-like DNA helicase	Machinery gene
BUN12_RS08995 (BUN12_1770)	-	1727419..1728039 (-)	621	WP_088030693.1	tetratricopeptide repeat protein	-
BUN12_RS09000 (BUN12_1771)	mnmA	1728127..1729242 (-)	1116	WP_013353020.1	tRNA 2-thiouridine(34) synthase MnmA	-
BUN12_RS09005 (BUN12_1772)	-	1729279..1730418 (-)	1140	WP_013353021.1	cysteine desulfurase family protein	-
BUN12_RS09010 (BUN12_1773)	cymR	1730437..1730853 (-)	417	WP_013353022.1	cysteine metabolism transcriptional regulator CymR	-
BUN12_RS09015 (BUN12_1774)	rarA	1731048..1732316 (+)	1269	WP_013353023.1	replication-associated recombination protein A	Machinery gene

Sequence

Protein

• Length: 792 a.a.
• Molecular weight: 88376.13 Da
• Isoelectric Point: 4.9881

>NTDB_id=176686 BUN12_RS08990 WP_013353018.1 1725022..1727400(-) (recD/recD2/recDB) [Bacillus amyloliquefaciens strain HK1]
MDQLKIEEQPYVKGVIHTVIYHNDTNLYTVLKVKVAETSEAIEDKVVSVTGYFPLLQEDETYTFYGKTATHPKFGLQFQA
EHFKKEIPTTKEGIIHYLSSDLFEGIGKKTAEEIVKKLGDGALNKILADASVLYDVPKMSKKKADKLAGELQRHQGLEQI
MISLNQYGFGPQLSMKIYQAYETETLEKIQENPYQLVKDVEGIGFVKADELGEKMGLSGNHPERIKAAILYTIESTCLSE
GHTYIDTKQLIINTQTLLNQSADGGRVTEMDAADGIIALGESKDIVIEGDRCYFPSLFYAEQNVAKRVLDIAAQTEYADQ
FPESEFLLALGELEERMKVQYAPSQKDAIQKALSSPMLLLTGGPGTGKTTVIKGIVELYSELHGVSLDPGDYKKDEAFPV
LLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTYNEDQPIEGKLIIIDEASMLDIWLASHLFKALPKHIQLIVVGD
EDQLPSVGPGQVLRDLLASEVLPTVRLTDIYRQAEGSSIVELAHDMKKGLLPKGLTAPTKDRSFIRCNSAQIKEVVDQVV
SNALKKGYTSRDIQVLAPMYRGKAGINELNMLLQDIMNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEIV
SIFYAKENTEKEDMVVVSFDGNEITFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRAKKF
LILCGEEEALEWGVKNNDATVRQTSLKNRLTEQTEEMDAELAALQKELPFSVYDANIGMEGITPFDFMEEKA

Nucleotide

• Length: 2379 bp

>NTDB_id=176686 BUN12_RS08990 WP_013353018.1 1725022..1727400(-) (recD/recD2/recDB) [Bacillus amyloliquefaciens strain HK1]
GTGGATCAGCTGAAAATCGAGGAACAACCGTATGTAAAAGGCGTTATTCATACGGTCATTTACCACAATGACACCAACCT
GTATACAGTGCTGAAGGTCAAGGTTGCAGAAACGTCTGAGGCGATCGAAGACAAGGTCGTATCCGTAACGGGCTACTTCC
CTCTGCTGCAAGAAGATGAGACTTACACATTTTACGGAAAAACCGCCACACACCCCAAGTTCGGCCTGCAATTCCAGGCT
GAACACTTTAAAAAAGAAATTCCGACCACAAAAGAAGGGATTATTCACTATTTATCAAGCGATCTGTTTGAAGGAATCGG
AAAAAAAACGGCGGAAGAAATCGTCAAAAAGCTTGGAGACGGCGCGCTGAATAAAATTCTGGCTGATGCGTCGGTGCTTT
ACGATGTGCCGAAAATGTCCAAAAAGAAAGCGGATAAGCTTGCCGGAGAGCTGCAGCGGCATCAGGGGCTGGAGCAGATT
ATGATTTCTCTTAACCAATATGGTTTCGGACCTCAGCTTTCCATGAAAATTTATCAGGCTTACGAAACGGAAACCCTTGA
GAAAATTCAGGAGAATCCTTATCAGCTTGTAAAGGACGTGGAAGGCATCGGCTTTGTAAAAGCCGACGAGCTGGGCGAAA
AAATGGGTCTGTCAGGGAACCATCCCGAGCGGATCAAAGCGGCGATCTTATATACGATTGAATCGACCTGCCTTTCAGAA
GGTCATACGTACATAGACACAAAGCAGCTGATTATCAATACGCAAACGCTTCTGAATCAGTCAGCTGACGGAGGCCGGGT
CACGGAAATGGATGCGGCTGACGGCATCATCGCCCTCGGAGAGAGTAAGGACATCGTCATAGAAGGAGACCGCTGCTATT
TTCCGTCTTTGTTTTACGCGGAACAAAATGTCGCAAAACGCGTGCTCGACATTGCGGCTCAGACGGAGTATGCCGATCAA
TTTCCTGAATCGGAATTTCTGCTTGCGCTCGGCGAACTGGAAGAACGGATGAAAGTTCAATACGCTCCGAGTCAAAAGGA
TGCCATTCAAAAAGCGCTGTCTTCGCCGATGCTTTTACTGACCGGAGGACCGGGTACGGGAAAAACGACCGTTATCAAAG
GAATCGTGGAATTATACAGTGAACTCCACGGCGTATCGCTTGATCCCGGTGATTATAAAAAAGACGAGGCGTTTCCGGTG
CTGCTTGCCGCGCCGACCGGAAGAGCCGCAAAACGGATGAGCGAATCTACGGGTCTGCCTGCTGTTACGATTCACAGGCT
GCTCGGCTGGAATGGCGCTGAAGGCTTTACCTACAATGAAGATCAGCCGATTGAAGGGAAACTGATCATTATAGACGAAG
CGAGTATGCTCGATATTTGGCTCGCCAGCCATTTGTTTAAGGCGCTCCCTAAGCACATCCAGCTCATCGTCGTGGGTGAT
GAAGACCAGCTTCCTTCCGTGGGGCCGGGGCAGGTGCTGAGAGACCTTTTGGCTTCTGAGGTGCTGCCGACCGTGCGTCT
GACAGATATTTACCGTCAGGCGGAAGGGTCATCCATCGTCGAACTTGCCCATGATATGAAAAAAGGGCTGCTTCCAAAAG
GACTGACCGCGCCGACAAAAGACCGCTCATTTATCCGCTGTAATTCTGCACAGATTAAAGAAGTCGTCGATCAAGTCGTT
TCAAACGCGTTAAAGAAGGGATATACCTCCAGAGATATTCAAGTGCTTGCGCCGATGTACAGGGGAAAAGCGGGAATTAA
CGAGCTGAATATGCTTCTTCAAGACATCATGAATCCGCCGAAAGAAAAAAGGCGGGAGCTGAAATTCGGAGATGTCGTCT
ACAGGACGGGCGATAAAATATTGCAGCTTGTCAACCAGCCGGAAAACAATGTGTTTAACGGTGATATCGGCGAAATCGTG
TCCATTTTTTATGCCAAAGAAAATACGGAAAAAGAAGACATGGTCGTCGTCTCGTTTGACGGCAATGAAATCACCTTTAC
GAAAAAGGATTTCAGCCAGTTTACCCATGCTTACTGCTGTTCCATCCACAAGTCTCAGGGAAGTGAATTTCCGATTGTCG
TCCTGCCTGTTGTCAAAGGCTACTATCGAATGCTTAGGAGAAATCTCCTTTATACCGCCATTACAAGGGCCAAGAAATTT
CTGATCCTTTGCGGAGAAGAAGAAGCGCTTGAATGGGGCGTCAAAAACAATGATGCCACCGTCAGACAGACGTCGCTTAA
AAACAGGCTCACAGAGCAGACTGAAGAGATGGATGCAGAACTGGCCGCTCTGCAAAAAGAACTGCCGTTCAGTGTATATG
ATGCGAATATCGGAATGGAAGGCATTACGCCGTTTGACTTTATGGAAGAAAAAGCGTAA

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-659)

• AAA domain (AAA_30) (341-548)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (676-724)

• Helix-hairpin-helix containing domain (HHH_RecD2) (154-244)

3D structure

• AlphaFold DB: A0A9P1JIN2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	88.748	99.874	0.886