Detailed information NTG0176687

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: BUN12_RS09015
• Genome accession: NZ_CP018902
• Coordinates: 1731048..1732316 (+)
• Length: 422 a.a.
• NCBI ID: WP_013353023.1
• Uniprot ID: A0A9P1NII9
• Organism: Bacillus amyloliquefaciens strain HK1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1726048..1737316

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BUN12_RS08995 (BUN12_1770)	-	1727419..1728039 (-)	621	WP_088030693.1	tetratricopeptide repeat protein	-
BUN12_RS09000 (BUN12_1771)	mnmA	1728127..1729242 (-)	1116	WP_013353020.1	tRNA 2-thiouridine(34) synthase MnmA	-
BUN12_RS09005 (BUN12_1772)	-	1729279..1730418 (-)	1140	WP_013353021.1	cysteine desulfurase family protein	-
BUN12_RS09010 (BUN12_1773)	cymR	1730437..1730853 (-)	417	WP_013353022.1	cysteine metabolism transcriptional regulator CymR	-
BUN12_RS09015 (BUN12_1774)	rarA	1731048..1732316 (+)	1269	WP_013353023.1	replication-associated recombination protein A	Machinery gene
BUN12_RS09020 (BUN12_1775)	-	1732434..1733198 (-)	765	WP_013353024.1	tRNA threonylcarbamoyladenosine dehydratase	-
BUN12_RS09030 (BUN12_1776)	aspS	1733525..1735303 (-)	1779	WP_013353025.1	aspartate--tRNA ligase	-
BUN12_RS09035 (BUN12_1777)	hisS	1735318..1736592 (-)	1275	WP_013353026.1	histidine--tRNA ligase	-
BUN12_RS20970 (BUN12_1779)	-	1736972..1737142 (-)	171	WP_014470770.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46685.56 Da
• Isoelectric Point: 8.2451

>NTDB_id=176687 BUN12_RS09015 WP_013353023.1 1731048..1732316(+) (rarA) [Bacillus amyloliquefaciens strain HK1]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALRR
ALTDEHRGLGSYSVSVDDEAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECLQKKSYTHDKDGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRSGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPEPLKNKQYYKP
KQTGKFEAAIKQVYEKLLKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=176687 BUN12_RS09015 WP_013353023.1 1731048..1732316(+) (rarA) [Bacillus amyloliquefaciens strain HK1]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGCCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGCGCAAAGCACCTATCATCCATGATCCTGTACGGACCGCCAGGCATCGGAAAAACGTCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGAAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAA
ATTGTCGTACAGGAAGCGAAAATGTCAGGTCAGGTCATCTTAATACTTGATGAAGTGCACAGGCTTGATAAGGGGAAGCA
GGATTTTCTCCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAATCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGTACCCAGATATTCGAACTCGAACCGTTAACACCGGATCTGATCAAGCAGGCATTGAGAAGA
GCGCTCACAGATGAACACCGGGGACTCGGTTCCTACAGCGTTTCGGTGGACGACGAAGCGATGGATCATTTCGCGCAAGG
GTGTGGAGGAGACGTCCGTTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTTTCCACAAAGGAATCAAGTGACGGCACGA
TCCGCATTACGCGGGAAACAGCGGAAGAATGTCTGCAGAAAAAAAGCTATACCCATGATAAAGACGGAGATGCGCATTAT
GACGTCTTATCCGCATTCCAAAAATCAATCCGCGGCTCAGACGCAAACGCCGCACTTCATTATTTAGCCCGACTGATCGA
AGCCGGCGATCTTGAAAGCATTTCAAGAAGACTTCTCGTAATCGCCTATGAAGATATCGGCCTTGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAGCGGATCGGCTTTCCCGAAGCGAGAATTCCGCTGGCGAATGCGGTA
ATCGAATTATGCCTTTCGCCAAAATCAAACTCCGCCATCTCAGCCGTTGATGAAGCGCTCAAAGATATCAGATCGGGTAA
AATCGGCGATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGAGCCCAAGAGCTCGGACGCGGAATCGGCTATCAAT
ATCCTCACGATTTCGAAAACGGATGGGTCGAACAGCAATATTTGCCTGAACCGTTAAAAAACAAACAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGCTGAAACAGAAAAAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

3D structure

• AlphaFold DB: A0A9P1NII9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.736	99.763	0.905