Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SporoP17a_RS14040 Genome accession   NZ_CP015109
Coordinates   2906020..2907837 (+) Length   605 a.a.
NCBI ID   WP_237262341.1    Uniprot ID   -
Organism   Sporosarcina ureae strain P17a     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2901020..2912837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SporoP17a_RS14020 (SporoP17a_13900) spxA 2902471..2902869 (+) 399 WP_009765721.1 transcriptional regulator SpxA -
  SporoP17a_RS14025 (SporoP17a_13905) mecA 2903108..2903758 (+) 651 WP_083035257.1 adaptor protein MecA -
  SporoP17a_RS14035 (SporoP17a_13915) - 2904813..2905970 (+) 1158 WP_167693440.1 competence protein CoiA -
  SporoP17a_RS14040 (SporoP17a_13920) pepF 2906020..2907837 (+) 1818 WP_237262341.1 oligoendopeptidase F Regulator
  SporoP17a_RS14045 (SporoP17a_13925) - 2908121..2908945 (-) 825 WP_083035261.1 DsbA family protein -
  SporoP17a_RS14050 (SporoP17a_13930) - 2908942..2909334 (-) 393 WP_083035262.1 globin -
  SporoP17a_RS17195 (SporoP17a_13935) - 2909579..2910238 (-) 660 WP_083035263.1 lytic transglycosylase domain-containing protein -
  SporoP17a_RS14060 (SporoP17a_13940) - 2910392..2910781 (+) 390 WP_083035264.1 hypothetical protein -
  SporoP17a_RS14065 (SporoP17a_13945) - 2910824..2911657 (+) 834 WP_029052471.1 NAD kinase -
  SporoP17a_RS14070 (SporoP17a_13950) - 2911626..2912591 (+) 966 WP_237262342.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69883.10 Da        Isoelectric Point: 4.8471

>NTDB_id=176684 SporoP17a_RS14040 WP_237262341.1 2906020..2907837(+) (pepF) [Sporosarcina ureae strain P17a]
MTNENKVLTRDEVSEEETWRLEDIFSSDEEWDKEYSKIEEMAKEAEQYKGTLGNGARPLFEALTYRDKLAERLRRLYTYA
HLKTDQDTTNSFYQAMDGRIRTLVVKISTALAYFTPELLSIDEKQLNETIDSHEGLRLYKQEFEELNAERAHVLSSEQEQ
LIAQLSEVTGKSSETFSMLNNADLAFGLVKDEDGNDVQLTHGRYSQFLESKDPKVREAAFKEMYSRYGEFKNTFASTLSG
NVKGHNVNARIRNYSSARAAALSNNHIPEQVYENLLSTINKNLGLLHRYVALRKKVLNVDTLHMWDIYTPLVEDTEMKYT
YEEAKETMLESFHPLGDDYRAVVKEGLDNRWVDVRENKGKRSGAYSSGSYGTNPYILLNWQDNVSNLFTLAHEFGHSVHS
YYSRKYQPFIYSGYSIFVAEVASTVNEALLNDHLLKVTTDEDQRIYLLNYWLDGFRATVFRQTMFAEFEHLIHKLDQEGV
PLTAEKLTEEYYALNKKYYGDAIVSDEEIGLEWARIPHFYMNYYVYQYATGYSAAVALSKQILEEGEPAVERYITNFLKA
GSSDYPIEVLKKAGVDMTSDKPIEEACRVFEARLDELEHLLAKRG

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=176684 SporoP17a_RS14040 WP_237262341.1 2906020..2907837(+) (pepF) [Sporosarcina ureae strain P17a]
TTGACGAATGAAAACAAAGTATTGACGCGCGATGAAGTATCGGAAGAGGAAACGTGGCGCTTGGAAGATATATTTTCTTC
TGATGAAGAATGGGATAAAGAATACAGCAAAATTGAAGAGATGGCTAAAGAAGCAGAACAGTATAAAGGGACACTTGGAA
ATGGCGCTCGTCCACTATTTGAAGCGTTAACATATCGTGATAAATTGGCGGAACGTCTACGAAGATTGTATACGTATGCC
CATCTAAAAACAGATCAGGATACAACGAATAGTTTCTATCAGGCAATGGACGGGCGAATTAGAACGTTAGTTGTGAAAAT
ATCTACAGCGTTAGCCTATTTCACGCCAGAACTACTTTCTATCGATGAAAAGCAATTGAATGAAACGATTGATTCACATG
AAGGTTTGCGTTTATATAAACAGGAATTTGAAGAGTTGAATGCAGAGCGTGCGCACGTTTTGTCGTCAGAACAAGAGCAA
TTAATCGCGCAGTTGTCTGAAGTAACCGGAAAATCTTCTGAAACATTTAGTATGTTAAACAATGCGGATTTGGCTTTCGG
TTTGGTCAAAGATGAAGATGGCAATGACGTTCAATTGACGCATGGTCGTTATTCACAATTCCTAGAGAGCAAGGATCCGA
AAGTTCGCGAAGCAGCATTTAAAGAAATGTATTCAAGATATGGGGAGTTCAAAAATACATTTGCTTCGACGTTAAGCGGG
AATGTAAAAGGGCATAATGTGAATGCTAGAATTAGAAATTATAGTTCTGCAAGAGCGGCAGCATTATCCAATAACCATAT
TCCGGAGCAAGTATATGAAAATCTATTGTCTACAATCAATAAAAATCTTGGTTTATTGCATCGCTATGTTGCATTGCGTA
AAAAAGTATTGAATGTGGATACGCTTCATATGTGGGATATCTACACGCCACTAGTGGAAGATACCGAGATGAAATATACG
TACGAGGAAGCAAAAGAAACTATGCTTGAAAGTTTCCATCCACTCGGTGATGATTATCGAGCTGTTGTAAAAGAAGGACT
TGATAATCGCTGGGTGGATGTTCGTGAAAATAAAGGAAAACGTTCAGGCGCGTATTCCTCAGGTTCTTATGGAACAAACC
CTTACATCCTATTGAACTGGCAAGACAACGTAAGCAATCTATTTACGTTAGCACATGAGTTCGGACATAGTGTACACAGT
TATTATTCCCGTAAGTATCAGCCATTCATTTATAGCGGCTATTCAATATTTGTGGCGGAAGTAGCGTCAACTGTCAATGA
GGCATTGCTAAATGATCACTTATTGAAGGTGACGACAGACGAAGATCAGCGAATCTACTTGTTGAACTACTGGCTAGATG
GATTCCGTGCGACAGTGTTCCGTCAGACCATGTTTGCGGAATTCGAACACCTAATTCATAAGCTGGATCAAGAAGGTGTG
CCGTTAACTGCTGAAAAATTAACAGAGGAATATTATGCTTTAAATAAAAAATATTACGGTGACGCGATTGTTAGTGACGA
GGAAATTGGTTTGGAGTGGGCACGTATTCCTCACTTCTATATGAATTATTATGTCTATCAATACGCAACAGGTTATAGCG
CGGCTGTAGCGCTCAGTAAGCAGATTCTAGAAGAGGGAGAGCCTGCAGTAGAACGTTATATTACAAACTTCTTGAAGGCA
GGTTCATCCGATTATCCTATTGAAGTACTTAAAAAAGCAGGTGTCGATATGACGTCTGACAAGCCGATTGAAGAAGCTTG
CCGAGTATTTGAAGCACGATTGGATGAGCTGGAACATCTACTAGCAAAAAGGGGATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-588)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.99

98.182

0.481

Multiple sequence alignment