Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SporoP17a_RS08010 Genome accession   NZ_CP015109
Coordinates   1619218..1620168 (-) Length   316 a.a.
NCBI ID   WP_083034191.1    Uniprot ID   -
Organism   Sporosarcina ureae strain P17a     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1614218..1625168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SporoP17a_RS07990 (SporoP17a_07920) - 1614845..1615987 (-) 1143 WP_208859837.1 MFS transporter -
  SporoP17a_RS07995 (SporoP17a_07925) - 1616521..1617483 (-) 963 WP_083034188.1 siderophore ABC transporter substrate-binding protein -
  SporoP17a_RS08000 (SporoP17a_07930) - 1617517..1618278 (-) 762 WP_083034189.1 ABC transporter ATP-binding protein -
  SporoP17a_RS08005 (SporoP17a_07935) - 1618275..1619225 (-) 951 WP_083034190.1 iron chelate uptake ABC transporter family permease subunit -
  SporoP17a_RS08010 (SporoP17a_07940) ceuB 1619218..1620168 (-) 951 WP_083034191.1 ABC transporter permease Machinery gene
  SporoP17a_RS08015 (SporoP17a_07945) - 1620415..1621266 (-) 852 WP_083034192.1 DUF6612 family protein -
  SporoP17a_RS08020 (SporoP17a_07950) hflX 1621530..1622798 (-) 1269 WP_083034193.1 GTPase HflX -
  SporoP17a_RS08025 (SporoP17a_07955) nfsA 1623226..1623957 (+) 732 WP_083034194.1 oxygen-insensitive NADPH nitroreductase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34680.99 Da        Isoelectric Point: 10.2691

>NTDB_id=176668 SporoP17a_RS08010 WP_083034191.1 1619218..1620168(-) (ceuB) [Sporosarcina ureae strain P17a]
MKKRYLLTAVILLSLLSLFVGASRITPADLLDWRSETTEIFLISRVPRLVAILLAGAGMSIAGLIMQQLSRNKFVSPTTA
GTLDATKLGILVSMLIFTNATLLEKMAVSFTFALLGTFLFMQILDRIKFKDAIFIPLVGLMFGSILSSITTFFAFKANVI
QNMSAWLQGDFSMIMKGRYELLYISIPVLIITYLYANRFTVAGMGEDFSKNLGLAYKSIVNIGLILVALITTTVVLTVGL
IPFLGLIIPNIVSIFKGDHLQKTLPHTALLGAIFLLICDILGRVIIFPYEISISLMVGVIGSAIFLFLLFRGKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=176668 SporoP17a_RS08010 WP_083034191.1 1619218..1620168(-) (ceuB) [Sporosarcina ureae strain P17a]
ATGAAGAAACGTTACTTACTTACAGCCGTTATACTATTATCACTTCTTTCGCTGTTTGTCGGCGCAAGCCGAATCACACC
AGCGGACCTATTGGATTGGCGTTCAGAAACAACAGAAATCTTCTTAATTAGTCGAGTTCCTCGATTAGTCGCGATATTAC
TGGCGGGCGCAGGGATGAGTATTGCAGGTTTGATTATGCAACAACTGAGCCGCAATAAATTTGTATCTCCTACTACGGCA
GGAACGTTGGATGCGACGAAACTTGGAATTTTAGTGTCTATGTTGATCTTTACTAACGCAACACTATTAGAAAAAATGGC
GGTGTCGTTTACATTCGCCTTACTTGGTACCTTCTTGTTTATGCAAATTCTTGATCGTATTAAATTCAAAGATGCGATTT
TCATACCGCTCGTTGGATTAATGTTCGGGAGTATCTTATCTTCCATCACCACATTTTTTGCATTTAAAGCGAACGTGATC
CAGAATATGTCTGCATGGCTTCAAGGAGACTTTTCCATGATCATGAAAGGCCGTTATGAACTTTTGTATATTAGTATACC
TGTGTTGATCATTACATATTTATATGCGAACCGATTTACAGTGGCAGGTATGGGAGAAGACTTTTCCAAGAACTTAGGAC
TAGCTTACAAGAGTATTGTCAATATCGGGTTGATCTTAGTCGCTTTGATTACGACAACCGTCGTATTGACAGTCGGACTG
ATTCCTTTCCTAGGGTTAATCATTCCGAACATCGTCTCGATTTTCAAAGGAGACCATTTGCAAAAGACGTTGCCGCATAC
TGCATTGCTAGGTGCAATCTTCCTTCTGATCTGCGACATTCTAGGCAGGGTTATTATTTTTCCGTATGAAATTTCGATCA
GTTTAATGGTCGGTGTCATCGGAAGCGCAATCTTCCTATTCTTGCTGTTTAGGGGGAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.396

99.051

0.519

Multiple sequence alignment