Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SporoP17a_RS00415 Genome accession   NZ_CP015109
Coordinates   72628..74328 (+) Length   566 a.a.
NCBI ID   WP_083030749.1    Uniprot ID   -
Organism   Sporosarcina ureae strain P17a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 67628..79328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SporoP17a_RS00390 (SporoP17a_00385) - 68106..68348 (+) 243 WP_083030734.1 exodeoxyribonuclease VII small subunit -
  SporoP17a_RS00395 (SporoP17a_00390) - 68341..69225 (+) 885 WP_083030737.1 polyprenyl synthetase family protein -
  SporoP17a_RS00400 (SporoP17a_00395) dxs 69367..71265 (+) 1899 WP_083030740.1 1-deoxy-D-xylulose-5-phosphate synthase -
  SporoP17a_RS00405 (SporoP17a_00400) - 71262..72083 (+) 822 WP_083030743.1 TlyA family RNA methyltransferase -
  SporoP17a_RS00410 (SporoP17a_00405) ahrC 72161..72610 (+) 450 WP_083030746.1 transcriptional regulator AhrC/ArgR -
  SporoP17a_RS00415 (SporoP17a_00410) recN 72628..74328 (+) 1701 WP_083030749.1 DNA repair protein RecN Machinery gene
  SporoP17a_RS00420 (SporoP17a_00415) - 74439..75392 (+) 954 WP_083030751.1 SpoIVB peptidase S55 domain-containing protein -
  SporoP17a_RS00425 (SporoP17a_00420) spo0A 75620..76414 (+) 795 WP_083030754.1 sporulation transcription factor Spo0A -
  SporoP17a_RS00430 (SporoP17a_00425) - 76938..78491 (+) 1554 WP_083030757.1 DUF342 domain-containing protein -
  SporoP17a_RS00435 (SporoP17a_00430) - 78484..79203 (+) 720 WP_083030760.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 64248.37 Da        Isoelectric Point: 4.8624

>NTDB_id=176654 SporoP17a_RS00415 WP_083030749.1 72628..74328(+) (recN) [Sporosarcina ureae strain P17a]
MLSELSIKNFAIIEQLEIAFDDGLTVLTGETGAGKSIIIDAVQLLAGGRGSQEFIRHGAKKAELQGLFTIDKNIENVTEK
LTEFGIDTEEGIVILRRDISASGKSVCRVNGKLVTIAILREIGALLIDIHGQHENQELMNEKRHIHLLDFFIGEPIERAM
STYTELYDKYKKLQQVIAAKTQDEQQIAQKIDLYKFQLEEIDAADLKIGEEEELESELVKLQHFNRLFDRLNTSYEALSL
ESHGLDWIGNSMSDLEEAASIDEDLKMMSETVNSSFYALQDVSHDLKRMIDGMEFQPDRLEFVEDRLALFLTLKRKYGKS
LEDILIYRDKIADALDQLVNRDERLHQNQELLAQYVEDLEIEANELSIIRKKAALSLEKGIEEQLKQLYMEKATFKVQIH
QKHPRQFDANGFDEVVFMISTNLGEPLKPLVRVASGGELSRMMLALKTIFSQHQGVTSIIFDEVDTGVSGRVAQSIAEKI
SMISSHSQVLCISHLPQVAAMADHHYLIKKEVHDGRTTTAIHDVMKTQRTEELSRMLSGAEITTLTLQHAEELLLLAEQR
KQEFRK

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=176654 SporoP17a_RS00415 WP_083030749.1 72628..74328(+) (recN) [Sporosarcina ureae strain P17a]
TTGTTAAGCGAACTTTCGATTAAAAACTTTGCTATTATTGAACAACTTGAAATCGCATTTGACGACGGTCTAACGGTGCT
AACCGGTGAAACGGGTGCTGGGAAATCCATTATTATTGATGCTGTCCAGCTCCTAGCTGGCGGCCGCGGTTCCCAGGAGT
TCATTCGCCACGGTGCGAAAAAAGCTGAGCTTCAAGGACTTTTCACAATTGACAAAAATATTGAAAATGTAACAGAGAAG
TTGACGGAATTTGGCATTGATACGGAAGAAGGTATTGTGATTTTACGCCGGGATATAAGTGCCAGCGGGAAATCTGTTTG
TCGCGTCAATGGTAAACTCGTAACTATTGCTATATTGCGTGAGATTGGCGCCTTGCTCATCGATATCCATGGTCAGCACG
AAAATCAGGAGTTAATGAACGAAAAGCGTCATATTCATTTGCTTGATTTCTTCATAGGTGAGCCGATTGAACGTGCGATG
TCAACCTATACCGAGTTATATGATAAATATAAAAAACTCCAGCAAGTCATTGCTGCTAAAACACAAGATGAGCAGCAAAT
TGCGCAAAAAATTGATCTATACAAATTCCAATTGGAAGAAATCGATGCAGCAGATTTGAAGATCGGTGAAGAGGAAGAGC
TGGAGTCTGAACTTGTGAAGCTCCAACATTTTAACCGGTTATTTGATCGCTTGAATACTTCATATGAAGCTTTGTCTCTA
GAGTCACATGGACTCGATTGGATCGGCAATTCAATGAGTGATCTGGAAGAAGCGGCTTCGATTGATGAAGATCTCAAAAT
GATGTCTGAAACAGTTAATTCTTCATTTTATGCGCTTCAAGATGTTTCACATGATTTAAAACGGATGATCGATGGGATGG
AATTCCAACCGGATCGATTGGAATTTGTCGAAGACCGATTAGCGCTGTTTTTGACATTGAAGCGTAAATATGGAAAATCA
CTTGAAGATATTTTAATTTATCGCGATAAAATTGCCGATGCACTCGATCAACTTGTCAATCGTGACGAAAGATTGCATCA
AAATCAGGAATTATTGGCACAATACGTAGAAGATCTTGAAATAGAAGCGAATGAATTATCGATAATCCGTAAAAAAGCGG
CACTGTCTCTTGAAAAAGGGATTGAAGAGCAGTTAAAACAGTTATATATGGAAAAGGCTACATTTAAAGTACAAATTCAT
CAAAAACACCCTCGGCAATTCGATGCTAATGGATTTGACGAAGTTGTATTTATGATTTCCACAAACTTGGGTGAACCTCT
CAAGCCTTTGGTACGAGTGGCGTCTGGTGGCGAATTATCACGAATGATGCTGGCGTTGAAAACGATTTTCTCTCAACATC
AAGGTGTCACGTCAATTATTTTTGATGAAGTGGATACCGGAGTCAGTGGCCGCGTAGCACAGTCCATTGCGGAAAAGATT
TCCATGATCTCCAGCCACTCACAAGTGTTATGTATTTCGCATTTACCGCAAGTGGCTGCAATGGCAGATCATCATTATCT
CATCAAAAAAGAAGTGCATGATGGACGAACGACTACGGCGATTCATGATGTGATGAAAACACAACGTACGGAAGAATTAT
CTCGCATGCTTTCCGGTGCAGAAATTACGACATTGACGCTTCAGCATGCAGAAGAACTTTTGCTTTTAGCCGAACAGCGT
AAGCAGGAATTTCGCAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.962

100

0.537

Multiple sequence alignment