Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SporoS204_RS10800 Genome accession   NZ_CP015108
Coordinates   2174554..2175504 (+) Length   316 a.a.
NCBI ID   WP_029054775.1    Uniprot ID   -
Organism   Sporosarcina ureae strain S204     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2169554..2180504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SporoS204_RS10780 (SporoS204_10710) nfsA 2170170..2170901 (-) 732 WP_029054778.1 oxygen-insensitive NADPH nitroreductase -
  SporoS204_RS10785 (SporoS204_10715) - 2171170..2171880 (+) 711 WP_081657947.1 VOC family protein -
  SporoS204_RS10790 (SporoS204_10720) hflX 2171932..2173200 (+) 1269 WP_029054777.1 GTPase HflX -
  SporoS204_RS10795 (SporoS204_10725) - 2173456..2174319 (+) 864 WP_029054776.1 DUF6612 family protein -
  SporoS204_RS10800 (SporoS204_10730) ceuB 2174554..2175504 (+) 951 WP_029054775.1 ABC transporter permease Machinery gene
  SporoS204_RS10805 (SporoS204_10735) - 2175497..2176447 (+) 951 WP_029054774.1 iron chelate uptake ABC transporter family permease subunit -
  SporoS204_RS10810 (SporoS204_10740) - 2176444..2177205 (+) 762 WP_029054773.1 ABC transporter ATP-binding protein -
  SporoS204_RS10815 (SporoS204_10745) - 2177239..2178201 (+) 963 WP_029054772.1 siderophore ABC transporter substrate-binding protein -
  SporoS204_RS16905 - 2178357..2178641 (-) 285 WP_198040309.1 hypothetical protein -
  SporoS204_RS10820 (SporoS204_10750) - 2178842..2179984 (+) 1143 WP_198040356.1 MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34733.02 Da        Isoelectric Point: 10.2691

>NTDB_id=176641 SporoS204_RS10800 WP_029054775.1 2174554..2175504(+) (ceuB) [Sporosarcina ureae strain S204]
MKKRYLITAVILLSFLSLFVGASRITPADLLDWRSEATEIFLISRFPRLVAILLAGAGMSIAGLIMQQLSRNKFVSPTTA
GTLDATKLGILVSMLIFTNATLLEKMAVSFTFALLGTFLFMQILDRIKFKDAIFIPLVGLMFGSILSSITTFFAFKANVI
QNMSAWLQGDFSMIMKGRYELLYISIPVLIITYLYANRFTVAGMGEDFSKNLGLAYKSIVNIGLVLVALITTTVVLTVGL
IPFLGLIIPNIVSIFKGDHLQKTLPHTALLGAIFLLICDILGRIIIFPYEISISLMVGVIGSAIFLFLLFRGKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=176641 SporoS204_RS10800 WP_029054775.1 2174554..2175504(+) (ceuB) [Sporosarcina ureae strain S204]
ATGAAGAAACGTTACTTAATTACAGCAGTTATACTTTTATCATTTCTTTCGCTGTTCGTAGGCGCAAGCCGAATTACACC
AGCGGACCTATTGGACTGGCGGTCAGAAGCGACAGAAATTTTCTTGATTAGTCGATTTCCTAGATTAGTCGCGATATTAC
TAGCAGGTGCAGGGATGAGTATTGCAGGTTTGATTATGCAACAATTGAGCCGCAATAAATTTGTATCACCTACCACTGCA
GGGACGTTGGATGCGACTAAACTTGGAATCTTAGTGTCTATGTTGATCTTTACCAACGCAACACTATTAGAAAAGATGGC
GGTATCGTTTACATTCGCCTTACTTGGTACATTTTTGTTTATGCAAATTCTTGATCGTATTAAATTCAAAGATGCGATTT
TCATTCCGCTTGTTGGATTGATGTTCGGGAGTATCTTATCTTCCATCACCACATTTTTTGCATTTAAAGCCAACGTGATC
CAGAATATGTCTGCTTGGCTTCAAGGAGATTTTTCCATGATCATGAAAGGCCGTTATGAGCTTTTGTATATTAGTATACC
CGTGTTGATCATTACATATTTATATGCGAATAGATTTACAGTGGCAGGTATGGGAGAAGACTTTTCCAAGAACTTAGGAC
TCGCTTACAAGAGTATCGTCAATATCGGGTTGGTCTTAGTCGCATTGATTACGACAACGGTTGTTTTGACAGTGGGACTG
ATTCCTTTCTTAGGGTTAATCATTCCGAACATCGTCTCTATCTTCAAAGGAGACCATTTACAAAAGACCTTGCCGCATAC
TGCATTGCTAGGCGCGATTTTCCTTCTTATTTGTGACATTCTAGGCAGGATTATTATATTCCCGTATGAAATCTCGATCA
GTTTAATGGTCGGTGTCATCGGAAGCGCAATCTTCCTGTTCTTGCTGTTTAGGGGGAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.716

99.051

0.522

Multiple sequence alignment