Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SporoS204_RS00425 Genome accession   NZ_CP015108
Coordinates   72999..74699 (+) Length   566 a.a.
NCBI ID   WP_029054569.1    Uniprot ID   -
Organism   Sporosarcina ureae strain S204     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 67999..79699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SporoS204_RS00405 (SporoS204_00410) ltrA 69027..70916 (+) 1890 WP_029053722.1 group II intron reverse transcriptase/maturase -
  SporoS204_RS00410 (SporoS204_00415) - 71081..71635 (+) 555 Protein_81 transketolase C-terminal domain-containing protein -
  SporoS204_RS00415 (SporoS204_00420) - 71632..72454 (+) 823 Protein_82 TlyA family RNA methyltransferase -
  SporoS204_RS00420 (SporoS204_00425) ahrC 72532..72981 (+) 450 WP_029054568.1 transcriptional regulator AhrC/ArgR -
  SporoS204_RS00425 (SporoS204_00430) recN 72999..74699 (+) 1701 WP_029054569.1 DNA repair protein RecN Machinery gene
  SporoS204_RS00430 (SporoS204_00435) - 74810..75763 (+) 954 WP_029054570.1 SpoIVB peptidase S55 domain-containing protein -
  SporoS204_RS00435 (SporoS204_00440) - 75990..76265 (+) 276 WP_232321223.1 response regulator -
  SporoS204_RS00440 (SporoS204_00445) ltrA 76963..78852 (+) 1890 WP_029053722.1 group II intron reverse transcriptase/maturase -
  SporoS204_RS00445 (SporoS204_00450) spo0A 79017..79556 (+) 540 Protein_88 sporulation transcription factor Spo0A -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 64137.21 Da        Isoelectric Point: 4.8576

>NTDB_id=176619 SporoS204_RS00425 WP_029054569.1 72999..74699(+) (recN) [Sporosarcina ureae strain S204]
MLSELSIKNFAIIEQLEIAFDDGLTVLTGETGAGKSIIIDAVQLLAGGRGSQEFIRHGAKKAELQGLFTIDKNIDSVTQK
LTEFGIDTEEGIVILRRDISASGKSVCRVNGKLVTIAILREIGALLIDIHGQHENQELMNEKRHIHLLDFFIGEPIERAM
STYTELYDKFKKLQQLIAAKTQDEQQIAQKIDLYKFQLEEIDAANLKVGEEEELESELVKLQHFNRLFDRLNTSYEALSL
ESHGLDWVGNSMSDLEEAASIDEELKTMSETVNSSFYALQDVSHDLKRMIDGMEFQPDRLEFVEDRLALFLTLKRKYGKS
LEDILIYRDKIADALDQLVNRDERLHQNQELLAQYVEDLEIEANELSIIRKKAALSLEKGIEEQLKQLYMEKATFKVQIH
QKQPRQFDANGFDEVVFMISTNLGEPLKPLVRVASGGELSRMMLALKTIFSQHQGVTSIIFDEVDTGVSGRVAQSIAEKI
SMISSHSQVLCISHLPQVAAMADHHYLIKKEVHDGRTTTAIHDVMKTERTEELSRMLSGAEITTLTLQHAEELLLLADQR
KQEFRK

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=176619 SporoS204_RS00425 WP_029054569.1 72999..74699(+) (recN) [Sporosarcina ureae strain S204]
TTGTTAAGCGAACTTTCGATTAAAAACTTTGCTATTATTGAACAACTTGAAATCGCATTTGACGACGGTCTAACGGTGCT
GACTGGTGAAACGGGTGCTGGAAAGTCAATTATTATTGATGCTGTCCAGCTCCTCGCTGGCGGCCGTGGTTCACAGGAAT
TCATTCGCCATGGTGCGAAGAAAGCTGAGCTTCAAGGACTTTTCACAATCGACAAAAATATTGATAGTGTAACGCAGAAG
TTGACGGAATTTGGTATTGATACGGAAGAAGGCATTGTGATTTTACGCAGGGATATAAGTGCCAGCGGGAAATCTGTTTG
CCGTGTCAATGGTAAACTCGTAACAATTGCTATATTGCGTGAGATTGGCGCCTTGCTAATCGATATCCATGGTCAGCACG
AAAATCAGGAGTTAATGAACGAAAAGCGTCATATTCATTTGCTAGATTTCTTTATAGGTGAGCCGATTGAACGTGCGATG
TCGACGTATACCGAGTTATATGATAAATTTAAAAAACTCCAGCAACTCATTGCAGCTAAAACACAAGATGAACAGCAAAT
CGCGCAGAAAATTGATTTATACAAATTCCAATTGGAAGAAATCGATGCAGCGAATTTGAAGGTCGGTGAAGAAGAAGAAT
TGGAGTCTGAACTTGTAAAGCTTCAACATTTTAATCGGTTATTTGATCGCTTGAATACTTCATATGAAGCATTGTCTCTA
GAGTCGCATGGACTCGATTGGGTTGGCAATTCGATGAGCGATCTCGAAGAAGCGGCTTCGATTGATGAAGAGCTGAAAAC
GATGTCTGAAACGGTGAATTCTTCCTTTTATGCGCTTCAAGATGTTTCGCATGATTTAAAAAGGATGATCGATGGGATGG
AATTCCAGCCAGATCGATTGGAGTTTGTCGAAGATCGGTTAGCGTTATTTTTGACATTGAAACGAAAATACGGAAAATCG
CTTGAAGATATTTTAATTTATCGCGATAAAATTGCTGATGCACTCGATCAACTTGTCAATCGTGACGAAAGATTGCATCA
AAACCAAGAATTATTGGCACAATACGTAGAAGATCTTGAAATAGAAGCGAATGAATTATCGATTATCCGTAAAAAAGCGG
CACTGTCTCTCGAAAAAGGGATTGAAGAGCAGTTAAAGCAGTTATATATGGAAAAGGCTACATTCAAAGTACAAATTCAC
CAAAAACAACCTCGACAATTTGATGCCAATGGATTTGATGAAGTCGTATTTATGATTTCCACAAACTTGGGTGAACCGCT
TAAGCCGTTGGTACGAGTGGCGTCTGGTGGCGAATTATCTCGAATGATGCTGGCGTTAAAAACGATTTTCTCTCAACATC
AAGGTGTTACATCGATTATTTTCGATGAAGTGGATACCGGAGTCAGTGGACGCGTAGCACAGTCCATAGCGGAAAAGATT
TCCATGATCTCCAGTCATTCGCAAGTGTTATGTATTTCGCATTTACCGCAAGTGGCTGCAATGGCAGATCATCATTATCT
TATCAAAAAAGAAGTGCATGATGGACGAACGACTACGGCGATTCATGATGTTATGAAAACAGAACGTACAGAAGAATTAT
CTCGCATGCTTTCCGGTGCAGAAATTACTACGTTGACGCTTCAGCATGCTGAAGAACTTTTGCTTCTAGCTGATCAACGT
AAGCAGGAATTCCGTAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.136

100

0.539

Multiple sequence alignment