Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   BU815_RS07295 Genome accession   NZ_CP018900
Coordinates   1422404..1423000 (-) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain YH502     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1417404..1428000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BU815_RS07275 (BU815_07305) - 1418159..1418923 (+) 765 WP_002781156.1 TIGR02757 family protein -
  BU815_RS07280 (BU815_07310) - 1418926..1419690 (+) 765 WP_002784060.1 TSUP family transporter -
  BU815_RS07285 (BU815_07315) ctsF 1419687..1420862 (-) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  BU815_RS07290 (BU815_07320) ctsE 1420849..1422411 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  BU815_RS07295 (BU815_07325) ctsX 1422404..1423000 (-) 597 WP_002779313.1 CDC27 family protein Machinery gene
  BU815_RS07300 (BU815_07330) ctsP 1422997..1423593 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  BU815_RS07305 (BU815_07335) ctsD 1423586..1425004 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  BU815_RS07310 (BU815_07340) ctsR 1424982..1425293 (-) 312 WP_002779316.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=176605 BU815_RS07295 WP_002779313.1 1422404..1423000(-) (ctsX) [Campylobacter coli strain YH502]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=176605 BU815_RS07295 WP_002779313.1 1422404..1423000(-) (ctsX) [Campylobacter coli strain YH502]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAGATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434