Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   BU815_RS02975 Genome accession   NZ_CP018900
Coordinates   580570..580950 (+) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain YH502     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 575570..585950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BU815_RS02955 (BU815_02960) - 575679..577613 (-) 1935 WP_002776352.1 ribonuclease R family protein -
  BU815_RS02960 (BU815_02965) ilvC 577736..578758 (+) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  BU815_RS02965 (BU815_02970) - 578761..579813 (+) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  BU815_RS02970 (BU815_02975) dprA 579803..580573 (+) 771 WP_002776372.1 DNA-processing protein DprA Machinery gene
  BU815_RS02975 (BU815_02980) dprB 580570..580950 (+) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  BU815_RS02980 (BU815_02985) - 580961..581815 (+) 855 WP_370300696.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  BU815_RS02985 (BU815_02990) msrA 582038..582538 (-) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  BU815_RS02990 (BU815_02995) ppa 582586..583104 (-) 519 WP_002776378.1 inorganic diphosphatase -
  BU815_RS02995 (BU815_03000) - 583114..583689 (-) 576 WP_002776379.1 adenylate kinase -
  BU815_RS03000 (BU815_03005) aspS 583686..585437 (-) 1752 WP_002784258.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=176576 BU815_RS02975 WP_002776373.1 580570..580950(+) (dprB) [Campylobacter coli strain YH502]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=176576 BU815_RS02975 WP_002776373.1 580570..580950(+) (dprB) [Campylobacter coli strain YH502]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421