Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BSL84_RS33910 Genome accession   NZ_CP018870
Coordinates   7471907..7472575 (+) Length   222 a.a.
NCBI ID   WP_075969538.1    Uniprot ID   -
Organism   Streptomyces sp. TN58     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7466907..7477575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL84_RS33890 (BSL84_33890) - 7468395..7469255 (-) 861 WP_075969541.1 class I SAM-dependent methyltransferase -
  BSL84_RS33895 (BSL84_33895) - 7469373..7469960 (+) 588 WP_030027604.1 TetR family transcriptional regulator -
  BSL84_RS33900 (BSL84_33900) - 7470180..7470554 (-) 375 WP_075969540.1 DUF6223 family protein -
  BSL84_RS33905 (BSL84_33905) - 7470783..7471910 (+) 1128 WP_075969539.1 sensor histidine kinase -
  BSL84_RS33910 (BSL84_33910) vraR 7471907..7472575 (+) 669 WP_075969538.1 response regulator Regulator
  BSL84_RS33915 (BSL84_33915) - 7472676..7474037 (-) 1362 WP_075969537.1 FAD-dependent oxidoreductase -
  BSL84_RS33920 (BSL84_33920) - 7474109..7474318 (-) 210 WP_075969536.1 hypothetical protein -
  BSL84_RS37350 (BSL84_33925) - 7474405..7474590 (-) 186 Protein_6694 hypothetical protein -
  BSL84_RS33930 (BSL84_33930) - 7474765..7475505 (-) 741 WP_030035760.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  BSL84_RS33935 (BSL84_33935) - 7475917..7476285 (+) 369 WP_030035761.1 ArsR/SmtB family transcription factor -
  BSL84_RS33940 (BSL84_33940) - 7476282..7476779 (+) 498 WP_030035763.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24160.88 Da        Isoelectric Point: 4.9925

>NTDB_id=176567 BSL84_RS33910 WP_075969538.1 7471907..7472575(+) (vraR) [Streptomyces sp. TN58]
MIRVLLVDDQPLIRSGFRALLDLEDDIEVVAEAADGREALALVKERLPDVALMDVQMPLMDGIEATRRIAADPALADVHV
VMLTNYGMDEYVLEALRAGAAGFLVKDILPEDFLHAVRVAARGDALLAPTITRRLIDRYVTQPPPARTGGGSGLKELTDR
EREAVALAAQGLSNDEIADRLLISPATAKTHVNRAMTKVHARDRAQLVVLAYESGLVTPRTR

Nucleotide


Download         Length: 669 bp        

>NTDB_id=176567 BSL84_RS33910 WP_075969538.1 7471907..7472575(+) (vraR) [Streptomyces sp. TN58]
GTGATCCGCGTCCTGCTCGTCGACGACCAGCCGCTCATCCGCAGCGGCTTCCGCGCACTGCTCGACCTGGAGGACGACAT
CGAGGTGGTGGCCGAAGCCGCCGACGGCCGGGAGGCCCTGGCACTCGTCAAGGAGCGGCTGCCCGACGTCGCGCTCATGG
ACGTCCAGATGCCCCTCATGGACGGCATCGAAGCGACCCGGCGCATCGCAGCCGACCCGGCCCTCGCCGACGTGCACGTC
GTCATGCTCACCAACTACGGCATGGACGAGTACGTCCTGGAAGCACTGCGCGCCGGCGCCGCCGGCTTCCTGGTCAAGGA
CATCCTGCCGGAGGACTTCCTGCACGCCGTACGCGTCGCCGCCCGCGGTGACGCCCTGCTCGCGCCCACCATCACCCGCA
GACTCATCGACCGCTACGTCACCCAGCCACCGCCCGCCCGCACCGGCGGCGGCAGCGGGCTGAAGGAGCTGACGGACCGC
GAACGCGAGGCCGTCGCCCTGGCCGCGCAGGGCCTGTCCAACGACGAGATCGCCGACCGGCTCCTCATCAGCCCCGCCAC
CGCCAAAACCCACGTCAACCGCGCCATGACCAAGGTCCACGCCCGCGACCGCGCCCAACTCGTGGTCCTCGCCTACGAAT
CCGGCCTGGTGACCCCCCGCACCCGATAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(157-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.5

97.297

0.365