Detailed information NTG0176538

Bioinformatically predicted

Overview

• Name: pilV
• Type: Machinery gene
• Locus tag: A2G07_RS17910
• Genome accession: NZ_CP015081
• Coordinates: 2171978..2172454 (+)
• Length: 158 a.a.
• NCBI ID: WP_034349477.1
• Uniprot ID: -
• Organism: Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain R1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	2172497..2190651	2171978..2172454	flank	43

Gene organization within MGE regions

Location: 2171978..2190651

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A2G07_RS17910	pilV	2171978..2172454 (+)	477	WP_034349477.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
A2G07_RS10765 (A2G07_10775)	-	2172497..2173681 (-)	1185	WP_162177563.1	HTTM domain-containing protein	-
A2G07_RS16795	-	2174048..2174425 (+)	378	WP_010887191.1	type IV pilin protein	-
A2G07_RS10770 (A2G07_10780)	-	2174409..2174684 (-)	276	WP_027479532.1	hypothetical protein	-
A2G07_RS10775 (A2G07_10785)	-	2174681..2175448 (-)	768	WP_010887189.1	sulfite exporter TauE/SafE family protein	-
A2G07_RS10780 (A2G07_10790)	-	2175525..2176208 (-)	684	WP_010887188.1	SDR family oxidoreductase	-
A2G07_RS10785 (A2G07_10795)	-	2176312..2176989 (+)	678	WP_010887187.1	glycerophosphodiester phosphodiesterase	-
A2G07_RS10790 (A2G07_10800)	-	2177014..2177808 (+)	795	WP_034349478.1	DUF72 domain-containing protein	-
A2G07_RS10795 (A2G07_10805)	-	2178019..2179338 (+)	1320	WP_162177565.1	hypothetical protein	-
A2G07_RS10800 (A2G07_10810)	-	2179338..2179667 (+)	330	WP_010887184.1	hypothetical protein	-
A2G07_RS10805 (A2G07_10815)	-	2179679..2182879 (+)	3201	WP_227085991.1	tubulin-like doman-containing protein	-
A2G07_RS10810 (A2G07_10820)	-	2183048..2184118 (+)	1071	WP_227085990.1	hypothetical protein	-
A2G07_RS10815 (A2G07_10825)	-	2184143..2184748 (+)	606	WP_010887181.1	OmpA family protein	-
A2G07_RS10820 (A2G07_10830)	-	2184752..2187346 (+)	2595	WP_027479533.1	hypothetical protein	-
A2G07_RS16800	-	2187339..2189417 (+)	2079	WP_162177566.1	protein kinase domain-containing protein	-

Sequence

Protein

• Length: 158 a.a.
• Molecular weight: 15369.17 Da
• Isoelectric Point: 7.5899

>NTDB_id=176538 A2G07_RS17910 WP_034349477.1 2171978..2172454(+) (pilV) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain R1]
MKNTTQGFTLIELLIVIAIIGILAAVLIPNLLGARAKANDSATQSYIRNCYTAVEVARGADGRLPAAGNCDSTANLGTNA
VATPGAITAAGAYSLDGTGSKFAVTATSVTNKTFCFDGAKMGEGTGATGACTFSTSTGTGTGTGTGTGTGTGTGTGSN

Nucleotide

• Length: 477 bp

>NTDB_id=176538 A2G07_RS17910 WP_034349477.1 2171978..2172454(+) (pilV) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain R1]
ATGAAGAACACCACCCAAGGCTTCACCCTGATCGAACTGCTCATCGTCATCGCCATCATCGGCATCCTGGCCGCCGTGTT
GATCCCCAACCTGCTGGGCGCCCGCGCCAAGGCCAACGACAGCGCCACCCAGAGCTACATCCGCAACTGCTACACCGCCG
TGGAAGTGGCCCGTGGTGCTGACGGCCGCCTGCCTGCTGCTGGCAACTGCGACAGCACGGCCAACCTGGGTACCAACGCT
GTGGCTACCCCTGGTGCAATCACTGCGGCAGGCGCTTACAGCCTGGATGGTACTGGTAGCAAGTTTGCCGTTACTGCCAC
CAGCGTGACCAACAAGACCTTCTGCTTCGACGGCGCGAAGATGGGCGAAGGCACTGGCGCTACTGGTGCCTGCACCTTCA
GCACCAGCACCGGCACCGGCACTGGTACCGGCACTGGTACCGGCACTGGCACCGGCACTGGTACCGGCAGCAACTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (5-27)

• Pilin A4 (PilA4) (39-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilV	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	100	100	1