Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BSL84_RS17855 Genome accession   NZ_CP018870
Coordinates   3941829..3942965 (-) Length   378 a.a.
NCBI ID   WP_045320625.1    Uniprot ID   -
Organism   Streptomyces sp. TN58     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3936829..3947965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL84_RS17845 (BSL84_17845) gyrB 3938864..3940885 (-) 2022 WP_030029793.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BSL84_RS17850 (BSL84_17850) - 3941203..3941679 (-) 477 WP_045320663.1 DUF721 domain-containing protein -
  BSL84_RS17855 (BSL84_17855) recF 3941829..3942965 (-) 1137 WP_045320625.1 DNA replication/repair protein RecF Machinery gene
  BSL84_RS17860 (BSL84_17860) gnd 3943022..3943897 (-) 876 WP_030029596.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  BSL84_RS17865 (BSL84_17865) dnaN 3944141..3945271 (-) 1131 WP_030029595.1 DNA polymerase III subunit beta -
  BSL84_RS17875 (BSL84_17875) dnaA 3946114..3947919 (-) 1806 WP_075970726.1 chromosomal replication initiator protein DnaA -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40908.67 Da        Isoelectric Point: 7.5161

>NTDB_id=176537 BSL84_RS17855 WP_045320625.1 3941829..3942965(-) (recF) [Streptomyces sp. TN58]
MHVSHLSLADFRSYARAEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVIRAAVTQGERR
QLVELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRKFLDELVTARSPRMAGVRSDYDRVLKQ
RNTLLKSAAMARRHGGRSMDLSTLDVWDQHLARAGAELLAQRLDLLATLLPLADKAYEQLAPGGGPLGLAYRCSAGESVD
SGAARTREALYEVLLAALGEVRKQEIERGVTLVGPHRDDVLLRLGELPAKGYASHGESWSYALALRLASYELLRSEGSEP
VLILDDVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPGVLVGARFGVSGGEVTRL

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=176537 BSL84_RS17855 WP_045320625.1 3941829..3942965(-) (recF) [Streptomyces sp. TN58]
ATGCATGTCTCGCATCTCTCGTTGGCCGACTTCCGCTCGTACGCCCGGGCCGAGGTACCCCTCGACCCGGGCGTCACCGC
TTTCGTGGGGCCCAACGGCCAGGGCAAGACCAACCTCGTCGAGGCGGTCGGCTACCTGGCGACGTTGGGCAGCCACCGCG
TGTCCTCGGACGCCCCGCTCGTGCGGATGGGCGCCGAGCGGGCCGTGATCCGCGCCGCCGTCACCCAGGGCGAGCGCCGG
CAGCTGGTCGAGCTGGAGCTGAACCCCGGCCGCGCCAACCGGGCCCGCATCAACCGGTCCTCGCAGGTCAGACCGCGGGA
CGTGCTGGGGATCGTACGGACGGTGCTCTTCGCGCCGGAGGACCTGGCCCTGGTCAAGGGCGACCCGGGCGAGCGGCGCA
AGTTCCTCGACGAGCTGGTCACGGCGCGCTCGCCGCGGATGGCGGGGGTCCGCTCGGACTACGACCGGGTGCTCAAGCAG
CGCAACACCCTGCTGAAGTCCGCGGCGATGGCCCGCCGACACGGCGGCCGCTCGATGGACCTGTCCACCCTGGACGTGTG
GGACCAGCACCTCGCGCGCGCGGGCGCGGAGCTGCTGGCGCAGCGCCTCGACCTGCTCGCGACGCTGCTTCCGCTGGCGG
ACAAGGCGTACGAGCAGCTCGCGCCGGGCGGCGGCCCGCTGGGCCTGGCGTACAGGTGCTCGGCCGGCGAGAGCGTCGAC
AGCGGGGCGGCGCGCACCCGCGAGGCCCTGTACGAGGTGCTGCTGGCCGCTCTCGGCGAGGTGCGCAAGCAGGAGATCGA
GCGCGGCGTGACCCTGGTCGGCCCGCACCGCGACGACGTGTTGCTGAGGCTGGGGGAGCTGCCCGCCAAGGGCTACGCCA
GCCACGGCGAGTCCTGGTCGTACGCGCTGGCGCTGCGGCTGGCCTCCTACGAGCTGCTGCGCTCGGAGGGCAGCGAGCCG
GTGCTGATCCTGGACGACGTGTTCGCGGAACTGGACGCGCGGCGCCGGGAGCGGCTGGCGGAGCTGGTGGCGCCCGGCGA
GCAGGTGCTGGTGACGGCGGCCGTGGACGACGACGTCCCGGGAGTGCTGGTGGGCGCGCGGTTCGGGGTGTCCGGCGGTG
AGGTGACCCGGTTGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.268

94.709

0.362

Multiple sequence alignment