Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   A2G07_RS07355 Genome accession   NZ_CP015081
Coordinates   1478986..1479426 (-) Length   146 a.a.
NCBI ID   WP_227086020.1    Uniprot ID   -
Organism   Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain R1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1473986..1484426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2G07_RS07335 (A2G07_07345) - 1474771..1475682 (-) 912 WP_034350720.1 cation diffusion facilitator family transporter -
  A2G07_RS07340 (A2G07_07350) - 1475758..1477482 (-) 1725 WP_027480202.1 dynamin family protein -
  A2G07_RS07345 (A2G07_07355) - 1477544..1478374 (-) 831 WP_233454352.1 PilW family protein -
  A2G07_RS07350 (A2G07_07360) - 1478425..1478985 (-) 561 WP_010887876.1 type II secretion system protein -
  A2G07_RS07355 (A2G07_07365) pilV 1478986..1479426 (-) 441 WP_227086020.1 pilus assembly FimT family protein Machinery gene
  A2G07_RS07360 (A2G07_07370) - 1479447..1481705 (-) 2259 WP_162177751.1 hypothetical protein -
  A2G07_RS07365 (A2G07_07375) - 1481848..1482594 (+) 747 WP_373969211.1 DUF4388 domain-containing protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15543.03 Da        Isoelectric Point: 9.4951

>NTDB_id=176529 A2G07_RS07355 WP_227086020.1 1478986..1479426(-) (pilV) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain R1]
MTLIELLVVIAIIGILMGLFGWNLVRSIRAAELREAATQVAVDLRQARSQAQRGSRDIVVVLPGSTGGTTYRFDTDVKTI
PNNVQLICKSNCGTGTTTNITYQAPYGELGAIGSIYTVRSPMNGIGDYEIRIVGVTGKVILAKAGS

Nucleotide


Download         Length: 441 bp        

>NTDB_id=176529 A2G07_RS07355 WP_227086020.1 1478986..1479426(-) (pilV) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain R1]
ATGACTCTTATTGAACTGCTGGTTGTCATAGCGATCATCGGTATTTTGATGGGTCTGTTCGGCTGGAATCTTGTGCGAAG
CATTCGGGCTGCCGAGCTGCGGGAAGCGGCGACTCAGGTGGCGGTGGATCTACGCCAGGCGCGCTCGCAGGCGCAGCGGG
GCAGCAGAGATATTGTTGTCGTGTTGCCGGGGAGTACAGGCGGAACCACCTATAGGTTCGACACGGACGTTAAAACCATT
CCCAACAATGTGCAGCTGATCTGCAAATCGAATTGCGGCACCGGCACGACGACGAACATCACTTATCAGGCACCGTACGG
CGAATTGGGCGCTATAGGGAGCATCTATACCGTCAGGAGCCCCATGAACGGAATTGGCGATTATGAAATCAGAATCGTGG
GCGTAACCGGCAAAGTCATTCTTGCTAAAGCGGGGTCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

100

100

1

Multiple sequence alignment