Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | A2G07_RS04290 | Genome accession | NZ_CP015081 |
| Coordinates | 837044..838264 (-) | Length | 406 a.a. |
| NCBI ID | WP_010888498.1 | Uniprot ID | Q9RTA2 |
| Organism | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain R1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 832044..843264
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A2G07_RS04260 (A2G07_04265) | - | 832287..833291 (+) | 1005 | WP_010888504.1 | 4Fe-4S binding protein | - |
| A2G07_RS04265 (A2G07_04270) | - | 833298..834644 (-) | 1347 | WP_027479798.1 | peptidoglycan D,D-transpeptidase FtsI family protein | - |
| A2G07_RS04270 (A2G07_04275) | - | 834635..834997 (-) | 363 | WP_010888502.1 | hypothetical protein | - |
| A2G07_RS04275 (A2G07_04280) | rsmH | 834998..835831 (-) | 834 | WP_231885331.1 | 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH | - |
| A2G07_RS04280 (A2G07_04285) | mraZ | 835932..836360 (-) | 429 | WP_010888500.1 | division/cell wall cluster transcriptional repressor MraZ | - |
| A2G07_RS04285 (A2G07_04290) | - | 836639..836992 (+) | 354 | WP_010888499.1 | DUF423 domain-containing protein | - |
| A2G07_RS04290 (A2G07_04295) | pilC | 837044..838264 (-) | 1221 | WP_010888498.1 | type II secretion system F family protein | Machinery gene |
| A2G07_RS04295 (A2G07_04300) | - | 838335..839027 (+) | 693 | WP_010888497.1 | L-threonylcarbamoyladenylate synthase | - |
| A2G07_RS04300 (A2G07_04305) | scpB | 839024..839572 (+) | 549 | WP_010888496.1 | SMC-Scp complex subunit ScpB | - |
| A2G07_RS04305 (A2G07_04310) | - | 839676..840458 (+) | 783 | WP_027479797.1 | DUF4388 domain-containing protein | - |
| A2G07_RS04310 (A2G07_04315) | - | 840496..841248 (-) | 753 | WP_010888493.1 | TSUP family transporter | - |
| A2G07_RS04315 (A2G07_04320) | - | 841354..841773 (+) | 420 | WP_010888492.1 | organic hydroperoxide resistance protein | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 44323.84 Da Isoelectric Point: 7.3174
>NTDB_id=176524 A2G07_RS04290 WP_010888498.1 837044..838264(-) (pilC) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain R1]
MPVYEYRARDRGGQTLKSQMEADSEAQVRDALRARNLMILEIKAPKTGLNADIKIPGLTDRPPGLKQVAVFSKQLATLIN
AGVPLVQSLAILQRQLDNKTFEAVIKKVRGEVESGQPLSEALQQHPKIFGRLFINLVRAGETSGTLDTVLERIADFQEKQ
LALQGKIKSALTYPTVVLVFALGITYFLLTTVVPQFAGILTQLNAPLPFITRMLMAVSNFLQHSGLLLLAIIAVIVLAYR
WYYRTPQGRHAIDDFKLRLPVFGNLIQKSAISSFARTFGLLVSSGVNIIESLEITKGTADNAIVEETIENAKNVVISGDQ
MSSSLATSKVFPPMVVSMVAIGEETGSLDNMLNKVADFYDREVDEAVESLTAAIEPMMIVFLGGIVGLIVAGMFLPMFSI
IGTLSQ
MPVYEYRARDRGGQTLKSQMEADSEAQVRDALRARNLMILEIKAPKTGLNADIKIPGLTDRPPGLKQVAVFSKQLATLIN
AGVPLVQSLAILQRQLDNKTFEAVIKKVRGEVESGQPLSEALQQHPKIFGRLFINLVRAGETSGTLDTVLERIADFQEKQ
LALQGKIKSALTYPTVVLVFALGITYFLLTTVVPQFAGILTQLNAPLPFITRMLMAVSNFLQHSGLLLLAIIAVIVLAYR
WYYRTPQGRHAIDDFKLRLPVFGNLIQKSAISSFARTFGLLVSSGVNIIESLEITKGTADNAIVEETIENAKNVVISGDQ
MSSSLATSKVFPPMVVSMVAIGEETGSLDNMLNKVADFYDREVDEAVESLTAAIEPMMIVFLGGIVGLIVAGMFLPMFSI
IGTLSQ
Nucleotide
Download Length: 1221 bp
>NTDB_id=176524 A2G07_RS04290 WP_010888498.1 837044..838264(-) (pilC) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain R1]
ATGCCGGTCTACGAATATCGCGCCCGGGACCGGGGGGGTCAGACCCTCAAATCCCAGATGGAGGCCGACTCCGAAGCCCA
GGTCCGCGACGCGCTGCGGGCCCGCAACCTGATGATTCTGGAAATCAAGGCCCCCAAGACGGGCCTGAACGCCGACATCA
AGATTCCAGGTCTCACCGACCGCCCGCCGGGACTCAAGCAGGTGGCGGTCTTCAGCAAGCAGCTCGCTACCCTGATCAAT
GCCGGGGTGCCGCTGGTGCAGTCGCTCGCCATCTTGCAGCGCCAGCTCGACAACAAGACCTTCGAGGCCGTGATCAAAAA
GGTGCGCGGCGAGGTCGAGTCGGGCCAGCCGCTCAGCGAGGCACTGCAACAGCACCCCAAGATCTTCGGGCGGCTGTTCA
TCAACCTCGTCCGCGCCGGAGAAACGAGCGGCACGCTCGACACGGTGCTCGAGCGTATCGCCGACTTTCAGGAAAAGCAG
CTCGCGTTGCAGGGCAAGATCAAGAGCGCGCTGACCTACCCCACGGTGGTGCTGGTCTTCGCCCTAGGGATCACCTACTT
CCTACTGACCACCGTGGTGCCGCAGTTCGCCGGCATCCTGACGCAGCTCAATGCGCCGCTCCCTTTCATCACGCGCATGC
TGATGGCGGTCTCCAACTTCTTGCAGCACTCGGGCCTGCTGCTGCTCGCCATCATCGCTGTGATCGTGCTCGCTTACCGC
TGGTACTACCGCACGCCCCAGGGCCGTCACGCCATTGACGACTTTAAGTTGCGCTTGCCGGTGTTCGGCAACCTGATCCA
GAAAAGCGCCATCAGTTCGTTTGCCCGCACCTTTGGCCTGCTCGTCAGCAGCGGGGTCAACATTATCGAGTCGCTGGAAA
TCACCAAGGGCACCGCCGACAATGCGATCGTCGAAGAAACCATCGAGAACGCTAAGAACGTGGTGATCTCGGGGGACCAG
ATGAGTTCAAGTCTGGCGACCAGCAAAGTCTTTCCGCCGATGGTGGTCAGCATGGTCGCCATCGGCGAGGAAACCGGGTC
GCTCGACAACATGCTCAACAAGGTTGCCGACTTCTATGACCGCGAGGTGGACGAGGCCGTCGAGAGTCTGACCGCCGCCA
TCGAACCGATGATGATCGTGTTTCTGGGCGGCATCGTCGGCCTGATCGTGGCCGGGATGTTCCTGCCGATGTTCAGCATC
ATCGGAACGCTCAGCCAGTAA
ATGCCGGTCTACGAATATCGCGCCCGGGACCGGGGGGGTCAGACCCTCAAATCCCAGATGGAGGCCGACTCCGAAGCCCA
GGTCCGCGACGCGCTGCGGGCCCGCAACCTGATGATTCTGGAAATCAAGGCCCCCAAGACGGGCCTGAACGCCGACATCA
AGATTCCAGGTCTCACCGACCGCCCGCCGGGACTCAAGCAGGTGGCGGTCTTCAGCAAGCAGCTCGCTACCCTGATCAAT
GCCGGGGTGCCGCTGGTGCAGTCGCTCGCCATCTTGCAGCGCCAGCTCGACAACAAGACCTTCGAGGCCGTGATCAAAAA
GGTGCGCGGCGAGGTCGAGTCGGGCCAGCCGCTCAGCGAGGCACTGCAACAGCACCCCAAGATCTTCGGGCGGCTGTTCA
TCAACCTCGTCCGCGCCGGAGAAACGAGCGGCACGCTCGACACGGTGCTCGAGCGTATCGCCGACTTTCAGGAAAAGCAG
CTCGCGTTGCAGGGCAAGATCAAGAGCGCGCTGACCTACCCCACGGTGGTGCTGGTCTTCGCCCTAGGGATCACCTACTT
CCTACTGACCACCGTGGTGCCGCAGTTCGCCGGCATCCTGACGCAGCTCAATGCGCCGCTCCCTTTCATCACGCGCATGC
TGATGGCGGTCTCCAACTTCTTGCAGCACTCGGGCCTGCTGCTGCTCGCCATCATCGCTGTGATCGTGCTCGCTTACCGC
TGGTACTACCGCACGCCCCAGGGCCGTCACGCCATTGACGACTTTAAGTTGCGCTTGCCGGTGTTCGGCAACCTGATCCA
GAAAAGCGCCATCAGTTCGTTTGCCCGCACCTTTGGCCTGCTCGTCAGCAGCGGGGTCAACATTATCGAGTCGCTGGAAA
TCACCAAGGGCACCGCCGACAATGCGATCGTCGAAGAAACCATCGAGAACGCTAAGAACGTGGTGATCTCGGGGGACCAG
ATGAGTTCAAGTCTGGCGACCAGCAAAGTCTTTCCGCCGATGGTGGTCAGCATGGTCGCCATCGGCGAGGAAACCGGGTC
GCTCGACAACATGCTCAACAAGGTTGCCGACTTCTATGACCGCGAGGTGGACGAGGCCGTCGAGAGTCTGACCGCCGCCA
TCGAACCGATGATGATCGTGTTTCTGGGCGGCATCGTCGGCCTGATCGTGGCCGGGATGTTCCTGCCGATGTTCAGCATC
ATCGGAACGCTCAGCCAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Thermus thermophilus HB27 |
60.099 |
100 |
0.601 |