Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   BSL84_RS13925 Genome accession   NZ_CP018870
Coordinates   3072884..3073861 (-) Length   325 a.a.
NCBI ID   WP_075970445.1    Uniprot ID   -
Organism   Streptomyces sp. TN58     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3067884..3078861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL84_RS13900 (BSL84_13900) - 3068046..3068456 (+) 411 WP_030029293.1 rodlin -
  BSL84_RS13905 (BSL84_13905) - 3068568..3069209 (-) 642 WP_075972088.1 vitamin K epoxide reductase family protein -
  BSL84_RS13910 (BSL84_13910) - 3069402..3070169 (+) 768 WP_030029290.1 DUF6227 family protein -
  BSL84_RS13915 (BSL84_13915) - 3070233..3071798 (-) 1566 WP_045321467.1 MFS transporter -
  BSL84_RS13920 (BSL84_13920) - 3071862..3072887 (+) 1026 WP_075970444.1 helix-turn-helix transcriptional regulator -
  BSL84_RS13925 (BSL84_13925) rpoS 3072884..3073861 (-) 978 WP_075970445.1 sigma-70 family RNA polymerase sigma factor Regulator
  BSL84_RS13930 (BSL84_13930) - 3074364..3075005 (+) 642 WP_045321450.1 Uma2 family endonuclease -
  BSL84_RS13935 (BSL84_13935) - 3075002..3075820 (-) 819 WP_037666333.1 dioxygenase -
  BSL84_RS13940 (BSL84_13940) - 3075933..3077471 (-) 1539 WP_075970446.1 MFS transporter -
  BSL84_RS13945 (BSL84_13945) - 3077534..3078232 (-) 699 WP_079273189.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36552.19 Da        Isoelectric Point: 5.0353

>NTDB_id=176522 BSL84_RS13925 WP_075970445.1 3072884..3073861(-) (rpoS) [Streptomyces sp. TN58]
MATRAVARRQSTSSARAVGGEIADRDLVGMYLDEIARTPLLDAAREVELSQIIEAGVYARQILDGATERDGDAPTREELQ
ALAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYTKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRVQREFNRENGRDPEHAEIAAELDSTEKRVGDVLDWARDPVSLNMSVDDEGDTQFGDLLEDT
SAISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIDDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDTG
FDAVA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=176522 BSL84_RS13925 WP_075970445.1 3072884..3073861(-) (rpoS) [Streptomyces sp. TN58]
ATGGCAACCCGCGCCGTCGCCCGCCGTCAGTCCACGAGCAGCGCACGCGCTGTGGGCGGGGAGATCGCAGACCGCGACCT
GGTCGGCATGTACCTGGACGAGATCGCGCGCACCCCGCTCCTCGACGCCGCCAGGGAAGTGGAGCTCTCCCAGATCATCG
AGGCCGGTGTCTACGCCCGGCAGATCCTCGACGGCGCGACGGAGCGCGACGGGGACGCGCCCACCCGCGAGGAACTCCAG
GCGCTGGCCGCCGAGGGGGAGCGGGCCAAGGAAGTCTTCATCCGCTCCAACCTCCGCCTCGTCGTCGCCGTCGCCCGCCG
CTATCCGCGCAGCGGCCTGCCCCTCCTCGACCTGATCCAGGAGGGCAACGCCGGCCTGGTCCGTGCCGTGGAGAAGTTCG
ACTACACCAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGCCAGGCGATCACCCGCTCCATCGCCGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACCTCGTCGAGGAGCTCGGCCGGATCCGCCGGGTCCAGCGCGAGTTCAACCGGGA
GAACGGCCGCGACCCGGAGCACGCCGAGATCGCCGCCGAGCTGGACTCGACGGAGAAGCGCGTCGGCGACGTACTGGACT
GGGCGCGCGACCCGGTCAGCCTGAACATGTCGGTGGACGACGAGGGCGACACCCAGTTCGGCGACCTCCTGGAGGACACC
TCGGCGATCTCCCCCGAACAGTCCGTGCTCTCGCTGCTGCGCAGCGAGGAACTGGAGGACCTGCTCGGCAAGCTCGACCA
GCGCACCGCGTCCATCATCAAGATGCGGTACGGGATCGACGACGGCCGTGAGCGGACCCTGACGGAGGTCGGCAAGCAGC
ACGGCCTGACCCGCGAGCGGATCCGACAGATCGAGAAGCACGCCCTGCTGGAGCTCAAGCGGATGGCGCGCGACACCGGC
TTCGACGCGGTGGCCTAA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)

Sigma-70 region 2 (Sigma70_r2)

(93-162)

Sigma-70 region 3 (Sigma70_r3)

(172-248)

Sigma-70, region 4 (Sigma70_r4)

(261-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.667

92.308

0.366

Multiple sequence alignment