Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BUQ71_RS23070 Genome accession   NZ_CP018840
Coordinates   4503967..4505394 (+) Length   475 a.a.
NCBI ID   WP_000980592.1    Uniprot ID   -
Organism   Escherichia coli strain KSC64     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4498967..4510394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUQ71_RS23045 (BUQ71_23400) - 4499465..4499983 (-) 519 Protein_4230 hypothetical protein -
  BUQ71_RS23050 (BUQ71_23405) - 4500078..4501058 (-) 981 WP_000399679.1 IS110-like element IS621 family transposase -
  BUQ71_RS23055 (BUQ71_23410) - 4501251..4501802 (-) 552 Protein_4232 FUSC family protein -
  BUQ71_RS23060 (BUQ71_23415) sbmC 4502000..4502473 (-) 474 WP_001105412.1 DNA gyrase inhibitor SbmC -
  BUQ71_RS23065 (BUQ71_23420) dacD 4502592..4503758 (-) 1167 WP_000830173.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  BUQ71_RS23070 (BUQ71_23425) sbcB 4503967..4505394 (+) 1428 WP_000980592.1 exodeoxyribonuclease I Machinery gene
  BUQ71_RS23075 (BUQ71_23430) tsuB 4505437..4505664 (-) 228 WP_000985278.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  BUQ71_RS23080 (BUQ71_23435) tsuA 4505678..4506736 (-) 1059 WP_000492312.1 thiosulfate utilization transporter TsuA/YeeE -
  BUQ71_RS23085 (BUQ71_23440) plaP 4506915..4508273 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  BUQ71_RS24630 yoeI 4508263..4508325 (-) 63 WP_010723108.1 membrane protein YoeI -
  BUQ71_RS23090 (BUQ71_23445) yeeY 4508540..4509469 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  BUQ71_RS23095 (BUQ71_23450) yeeZ 4509515..4510339 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54452.77 Da        Isoelectric Point: 5.4720

>NTDB_id=176491 BUQ71_RS23070 WP_000980592.1 4503967..4505394(+) (sbcB) [Escherichia coli strain KSC64]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=176491 BUQ71_RS23070 WP_000980592.1 4503967..4505394(+) (sbcB) [Escherichia coli strain KSC64]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGAGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTAGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583