Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A4R38_RS18655 Genome accession   NZ_CP015074
Coordinates   3732234..3732863 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain Ecol_745     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3727234..3737863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4R38_RS18640 (A4R38_18645) helD 3727476..3729530 (-) 2055 WP_001295938.1 DNA helicase IV -
  A4R38_RS18645 (A4R38_18650) yccF 3729653..3730099 (+) 447 WP_001261235.1 YccF domain-containing protein -
  A4R38_RS18650 (A4R38_18655) yccS 3730109..3732271 (+) 2163 WP_000875041.1 YccS family putative transporter -
  A4R38_RS18655 (A4R38_18660) sxy/tfoX 3732234..3732863 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  A4R38_RS18660 (A4R38_18665) sulA 3733082..3733591 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  A4R38_RS18670 (A4R38_18675) ompA 3733947..3734999 (+) 1053 WP_001346420.1 porin OmpA -
  A4R38_RS18675 (A4R38_18680) matP 3735075..3735527 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  A4R38_RS18680 (A4R38_18685) ycbZ 3735713..3737473 (+) 1761 WP_000156502.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=176472 A4R38_RS18655 WP_000839151.1 3732234..3732863(-) (sxy/tfoX) [Escherichia coli strain Ecol_745]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=176472 A4R38_RS18655 WP_000839151.1 3732234..3732863(-) (sxy/tfoX) [Escherichia coli strain Ecol_745]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment