Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BUQ71_RS07970 Genome accession   NZ_CP018840
Coordinates   1548464..1549132 (-) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli strain KSC64     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1543464..1554132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUQ71_RS07940 (BUQ71_08055) rfaQ 1543642..1544700 (-) 1059 WP_024227764.1 lipopolysaccharide core heptosyltransferase RfaQ -
  BUQ71_RS07945 (BUQ71_08060) waaA 1545113..1546390 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  BUQ71_RS07950 (BUQ71_08065) coaD 1546398..1546877 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  BUQ71_RS07955 (BUQ71_08070) mutM 1546916..1547725 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  BUQ71_RS07960 (BUQ71_08075) rpmG 1547823..1547990 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  BUQ71_RS07965 (BUQ71_08080) rpmB 1548011..1548247 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  BUQ71_RS07970 (BUQ71_08085) radC 1548464..1549132 (-) 669 WP_001298959.1 DNA repair protein RadC Machinery gene
  BUQ71_RS07975 (BUQ71_08090) coaBC 1549304..1550524 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BUQ71_RS07980 (BUQ71_08095) dut 1550502..1550960 (+) 459 WP_000976070.1 dUTP diphosphatase -
  BUQ71_RS07985 (BUQ71_08100) slmA 1551067..1551663 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  BUQ71_RS07990 (BUQ71_08105) pyrE 1551700..1552341 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  BUQ71_RS07995 (BUQ71_08110) rph 1552407..1553123 (-) 717 WP_001247089.1 ribonuclease PH -
  BUQ71_RS08005 (BUQ71_08120) yicC 1553250..1554113 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=176445 BUQ71_RS07970 WP_001298959.1 1548464..1549132(-) (radC) [Escherichia coli strain KSC64]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=176445 BUQ71_RS07970 WP_001298959.1 1548464..1549132(-) (radC) [Escherichia coli strain KSC64]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment