Detailed information NTG0176427

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BUQ71_RS02920
• Genome accession: NZ_CP018840
• Coordinates: 570433..571425 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain KSC64
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 565433..576425

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BUQ71_RS02895 (BUQ71_02960)	ygbN	566088..567452 (+)	1365	WP_000104429.1	GntP family transporter	-
BUQ71_RS02900 (BUQ71_02965)	-	567491..567727 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
BUQ71_RS02905 (BUQ71_02970)	-	567738..569165 (-)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
BUQ71_RS02910 (BUQ71_02975)	-	569165..569758 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
BUQ71_RS02915 (BUQ71_02980)	-	569905..570312 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
BUQ71_RS02920 (BUQ71_02985)	rpoS	570433..571425 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BUQ71_RS02925 (BUQ71_02990)	nlpD	571488..572582 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
BUQ71_RS02930 (BUQ71_02995)	pcm	572767..573393 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BUQ71_RS02935 (BUQ71_03000)	surE	573387..574148 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BUQ71_RS02940 (BUQ71_03005)	truD	574129..575178 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
BUQ71_RS02945 (BUQ71_03010)	ispF	575175..575654 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BUQ71_RS02950 (BUQ71_03015)	ispD	575654..576364 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=176427 BUQ71_RS02920 WP_000081550.1 570433..571425(-) (rpoS) [Escherichia coli strain KSC64]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=176427 BUQ71_RS02920 WP_000081550.1 570433..571425(-) (rpoS) [Escherichia coli strain KSC64]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715