Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   BUM80_RS03015 Genome accession   NZ_CP018838
Coordinates   580848..581918 (+) Length   356 a.a.
NCBI ID   WP_000817877.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 11A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 575848..586918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUM80_RS11690 (BUM80_03095) - 576816..577008 (-) 193 Protein_564 hypothetical protein -
  BUM80_RS03000 (BUM80_03100) ylqF 577090..577941 (+) 852 WP_000201315.1 ribosome biogenesis GTPase YlqF -
  BUM80_RS03005 (BUM80_03105) - 577928..578707 (+) 780 WP_000201123.1 ribonuclease HII -
  BUM80_RS03010 (BUM80_03110) - 578723..580273 (+) 1551 WP_000392548.1 ClC family H(+)/Cl(-) exchange transporter -
  BUM80_RS03015 (BUM80_03115) xerS 580848..581918 (+) 1071 WP_000817877.1 tyrosine recombinase XerS Machinery gene
  BUM80_RS03020 (BUM80_03120) - 581989..582978 (-) 990 WP_000873987.1 lipoate--protein ligase -
  BUM80_RS03025 (BUM80_03125) lpdA 583042..584745 (-) 1704 WP_001162916.1 dihydrolipoyl dehydrogenase -
  BUM80_RS03030 (BUM80_03130) - 584791..585834 (-) 1044 WP_000752697.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41143.16 Da        Isoelectric Point: 9.6220

>NTDB_id=176323 BUM80_RS03015 WP_000817877.1 580848..581918(+) (xerS) [Streptococcus pneumoniae strain 11A]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSALENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=176323 BUM80_RS03015 WP_000817877.1 580848..581918(+) (xerS) [Streptococcus pneumoniae strain 11A]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTACCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGCTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACGCTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATTGTTAATGA
TGAACAAAAGAATGCTCTAGATAGTTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.719

100

0.997