Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   A4G13_RS01760 Genome accession   NZ_CP015031
Coordinates   382638..383591 (+) Length   317 a.a.
NCBI ID   WP_142999797.1    Uniprot ID   -
Organism   Basfia succiniciproducens strain JF4016     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 377638..388591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4G13_RS01740 (A4G13_01725) metF 378224..379105 (+) 882 WP_011199966.1 methylenetetrahydrofolate reductase -
  A4G13_RS01745 (A4G13_01730) znuB 379212..379997 (-) 786 WP_011199968.1 zinc ABC transporter permease subunit ZnuB -
  A4G13_RS01750 (A4G13_01735) znuC 380009..380803 (-) 795 WP_090654730.1 zinc ABC transporter ATP-binding protein ZnuC -
  A4G13_RS01755 (A4G13_01740) mepM 381054..382520 (+) 1467 WP_165898039.1 murein DD-endopeptidase MepM -
  A4G13_RS01760 (A4G13_01745) ceuB 382638..383591 (+) 954 WP_142999797.1 ABC transporter permease Machinery gene
  A4G13_RS01765 (A4G13_01750) - 383584..384564 (+) 981 WP_090654736.1 iron chelate uptake ABC transporter family permease subunit -
  A4G13_RS01770 (A4G13_01755) - 384555..385319 (+) 765 WP_090654737.1 ATP-binding cassette domain-containing protein -
  A4G13_RS01775 (A4G13_01760) - 385343..386251 (+) 909 WP_090654739.1 ABC transporter substrate-binding protein -
  A4G13_RS01780 (A4G13_01765) adk 386326..386970 (-) 645 WP_011199975.1 adenylate kinase -
  A4G13_RS01785 (A4G13_01770) - 387046..388308 (-) 1263 WP_090654741.1 AmpG family muropeptide MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35057.25 Da        Isoelectric Point: 10.0324

>NTDB_id=176317 A4G13_RS01760 WP_142999797.1 382638..383591(+) (ceuB) [Basfia succiniciproducens strain JF4016]
MIHRRYLILLLLLLSIISLFLGVSSVNLKGLLYFNSEQWQILLISRVPRLISILIAGSALSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILISMLVFPTASMLFKTVIAIVVSFLGTLLFMTILSRLKFKDSIFVPLVGIMFGNIISSVTAFIAYQQDI
LQNLSGWLQGDFSLIMSGRYEILYFSIPALITAYLFANRFSIVGMGQDFAVNLGLNYQQVLYLGLAIVATVSSIVIVSVG
VIPFLGLIIPNLVTLYLGDNLKKILSHTALLGAVFVLFCDIFGRIVIYPYEIAINAVVGVFGSAIFLYLLFKRYRHV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=176317 A4G13_RS01760 WP_142999797.1 382638..383591(+) (ceuB) [Basfia succiniciproducens strain JF4016]
ATGATTCATCGTCGTTATTTAATTTTATTACTTCTCTTATTATCTATAATTTCTTTATTCCTCGGTGTGAGCTCGGTTAA
TCTTAAGGGATTACTGTATTTTAACAGTGAGCAGTGGCAAATTCTGTTGATTAGCCGCGTTCCCCGTTTAATCAGTATTT
TAATTGCCGGTTCGGCACTAAGTATTTGCGGCCTTGTTATGCAGCAATTAAGCCGTAATCGCTTTGTTTCGCCTACCACC
GCGGGCACGATGGACAGCGCACGTCTTGGTATTCTTATTTCGATGCTGGTTTTTCCCACCGCTTCTATGCTGTTTAAAAC
GGTGATCGCAATTGTCGTTTCTTTTCTCGGCACCTTATTGTTTATGACAATCCTCTCCCGCCTTAAATTTAAGGATAGTA
TTTTCGTGCCTTTGGTCGGCATTATGTTCGGCAATATTATCAGTTCCGTTACCGCATTTATTGCCTATCAGCAGGATATT
CTGCAGAATTTATCGGGCTGGTTGCAGGGCGATTTTTCATTGATTATGAGCGGACGTTATGAAATTCTTTATTTCAGCAT
TCCCGCCTTGATTACGGCTTATTTGTTTGCCAATCGGTTTTCTATTGTGGGTATGGGACAGGATTTTGCGGTCAATCTCG
GTTTGAATTATCAGCAGGTGCTATATCTCGGTTTGGCCATTGTTGCCACGGTATCTTCGATTGTTATTGTGTCCGTAGGC
GTGATTCCGTTTCTCGGCTTGATTATTCCTAATTTAGTCACGCTGTATTTGGGGGATAATCTGAAAAAAATCCTTTCTCA
TACCGCACTTTTAGGCGCCGTTTTTGTTTTGTTTTGCGATATTTTCGGGCGCATTGTGATTTATCCTTATGAAATTGCCA
TCAATGCGGTTGTAGGTGTATTCGGCAGTGCTATTTTCTTATATTTGTTATTTAAGCGGTATCGGCATGTCTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.449

98.423

0.546

Multiple sequence alignment