Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HPYLPMSS1_RS00530 Genome accession   NZ_CP018823
Coordinates   104884..105342 (-) Length   152 a.a.
NCBI ID   WP_162272565.1    Uniprot ID   -
Organism   Helicobacter pylori PMSS1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 99884..110342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPYLPMSS1_RS00515 (HPYLPMSS1_00097) - 100279..101061 (-) 783 WP_077231655.1 glycosyltransferase family 2 protein -
  HPYLPMSS1_RS00520 (HPYLPMSS1_00098) tlpB 101093..102790 (-) 1698 WP_077231656.1 methyl-accepting chemotaxis protein TlpB -
  HPYLPMSS1_RS00525 (HPYLPMSS1_00099) - 102997..104673 (-) 1677 WP_306424614.1 bifunctional metallophosphatase/5'-nucleotidase -
  HPYLPMSS1_RS00530 (HPYLPMSS1_00100) luxS 104884..105342 (-) 459 WP_162272565.1 S-ribosylhomocysteine lyase Regulator
  HPYLPMSS1_RS00535 (HPYLPMSS1_00101) - 105380..106522 (-) 1143 WP_077231658.1 cystathionine gamma-synthase -
  HPYLPMSS1_RS00540 (HPYLPMSS1_00102) - 106547..107464 (-) 918 WP_162272566.1 O-acetylserine-dependent cystathionine beta-synthase -
  HPYLPMSS1_RS00545 (HPYLPMSS1_00103) - 107583..108161 (+) 579 WP_077231660.1 hypothetical protein -
  HPYLPMSS1_RS00550 (HPYLPMSS1_00104) dnaK 108394..110256 (-) 1863 WP_077231661.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17293.76 Da        Isoelectric Point: 6.8403

>NTDB_id=176266 HPYLPMSS1_RS00530 WP_162272565.1 104884..105342(-) (luxS) [Helicobacter pylori PMSS1]
MKMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIIKYDVRLKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSPMGC
QTGFYLTVLNHDNYTEVLEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAKNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=176266 HPYLPMSS1_RS00530 WP_162272565.1 104884..105342(-) (luxS) [Helicobacter pylori PMSS1]
ATGAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTGTCGCTGATCGCAAAAA
GGGCGTTAATGGGGATTTGATTATCAAATACGATGTGCGCCTCAAACAACCCAACAAAGATCACATGGACATGCCAAGCT
TGCACTCTTTAGAGCATTTAGTCGCTGAAATTATCCGCAACCATGCCAGTTATGTCGTGGATTGGTCGCCTATGGGTTGC
CAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACGGAGGTTTTAGAGGTTTTAGAAAAGACGATGCAAGA
TGTGTTAAAGGCTACAGAAGTGCCTGCCAGTAATGAAAAACAATGCGGTTGGGCGGCTAACCACACTTTAGAGGGCGCCA
AGAATTTAGCGCGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

42.553

92.763

0.395