Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SporoP33_RS13365 Genome accession   NZ_CP015027
Coordinates   2746125..2747942 (+) Length   605 a.a.
NCBI ID   WP_081244179.1    Uniprot ID   -
Organism   Sporosarcina sp. P33     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2741125..2752942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SporoP33_RS13350 (SporoP33_13270) spxA 2742291..2742689 (+) 399 WP_009765721.1 transcriptional regulator SpxA -
  SporoP33_RS13355 (SporoP33_13275) mecA 2742928..2743578 (+) 651 WP_081244177.1 adaptor protein MecA -
  SporoP33_RS16130 - 2744124..2744288 (+) 165 WP_155961370.1 hypothetical protein -
  SporoP33_RS16135 - 2744521..2744685 (+) 165 WP_155961371.1 hypothetical protein -
  SporoP33_RS13360 (SporoP33_13280) - 2744916..2746073 (+) 1158 WP_196796802.1 competence protein CoiA -
  SporoP33_RS13365 (SporoP33_13285) pepF 2746125..2747942 (+) 1818 WP_081244179.1 oligoendopeptidase F Regulator
  SporoP33_RS13370 (SporoP33_13290) - 2748208..2749041 (-) 834 WP_081244180.1 DsbA family protein -
  SporoP33_RS13375 (SporoP33_13295) - 2749038..2749430 (-) 393 WP_081244181.1 globin -
  SporoP33_RS16540 - 2749720..2750379 (-) 660 WP_231293255.1 lytic transglycosylase domain-containing protein -
  SporoP33_RS13385 (SporoP33_13305) - 2750539..2750922 (+) 384 WP_155961372.1 hypothetical protein -
  SporoP33_RS13390 (SporoP33_13310) - 2750965..2751795 (+) 831 WP_081244871.1 NAD kinase -
  SporoP33_RS13395 (SporoP33_13315) - 2751782..2752765 (+) 984 WP_155961373.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70122.41 Da        Isoelectric Point: 4.8158

>NTDB_id=176263 SporoP33_RS13365 WP_081244179.1 2746125..2747942(+) (pepF) [Sporosarcina sp. P33]
MTNDNRVLTRDEVSEEETWRLEDIFASDEAWDAEYRKIEGMANEAEQYKGTLGNGARPLFEALTYRDKLAERLRRLYTYA
HLKTDQDTTNSFYQAMDGRIRTLVVKISTALSYFTPELLSIDEKKLNETIESHEGLRLYKQEFEELNAQRAHVLSSEQEE
LIAQLSEVTGKSSETFSMLNNADLTFGMVKDEEGNEIQLTHGRYSRFLESKDPKVREAAFKEMYARYGEFKNTFASTLSG
NVKGHNVSAKIRNYSSARAAALSNNHIPEQVYENLVSTISNNLNLLHRYIALRKKVLKLDTLHMWDIYTPLVEDTEMKYT
YEEAKETMLESFHPLGEDYRSVVREGLENRWVDVRENKGKRSGAYSSGSYGTNPYILMNWQDNVSNLFTLAHEFGHSVHS
YYSRKYQPFIYSGYSIFVAEVASTVNEALLNDHLLKVTKDEDQRIYLLNYWLDGFRATVFRQTMFAEFEHLIHTLDQQGV
PLTAEKLTEEYYALNEKYYGDAIVSDEEIGLEWARIPHFYMNYYVYQYATGYSAAVALSKQILEEGEPAVERYITNFLKA
GSSDYPIEVLKKAGVDMTSEKPIEDACRVFEERLLELEQLLENRQ

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=176263 SporoP33_RS13365 WP_081244179.1 2746125..2747942(+) (pepF) [Sporosarcina sp. P33]
TTGACAAATGACAACAGAGTGTTGACGCGCGATGAGGTATCTGAAGAAGAAACGTGGCGCCTGGAGGATATATTTGCATC
CGACGAAGCGTGGGATGCAGAGTACCGCAAAATCGAAGGGATGGCCAATGAAGCGGAGCAGTATAAGGGCACGCTTGGAA
ACGGTGCGCGTCCGCTGTTTGAAGCATTGACGTATCGCGATAAATTGGCAGAGCGCCTGCGCAGACTTTATACGTATGCA
CACTTGAAAACAGATCAGGATACAACAAACAGTTTCTATCAGGCAATGGACGGACGCATTAGAACACTAGTCGTGAAAAT
ATCTACAGCACTGTCTTACTTCACACCTGAACTGCTTTCGATTGATGAGAAGAAGTTGAATGAAACGATTGAGTCGCATG
AAGGATTGCGTTTGTATAAGCAGGAATTTGAGGAATTGAATGCTCAGCGTGCACATGTGCTTTCATCCGAACAGGAAGAG
CTGATTGCACAGTTATCAGAAGTGACAGGGAAGTCTTCTGAAACATTCAGTATGCTCAATAATGCGGATTTAACTTTCGG
AATGGTGAAAGACGAAGAAGGCAATGAAATACAGCTGACGCATGGCCGTTACTCGCGCTTCCTTGAGAGTAAAGATCCGA
AAGTGCGCGAGGCAGCATTTAAAGAGATGTATGCAAGATACGGCGAGTTCAAAAATACGTTCGCTTCCACATTGAGCGGA
AACGTCAAAGGACATAATGTCAGTGCAAAAATCCGTAATTACAGTTCAGCGAGAGCCGCTGCGTTATCGAATAACCATAT
TCCCGAACAAGTGTATGAGAATCTGGTTTCTACGATTAGCAATAACTTAAATTTATTGCACCGTTATATAGCGCTCCGCA
AGAAAGTATTGAAGCTCGATACACTTCATATGTGGGATATTTATACTCCGCTCGTGGAAGACACAGAGATGAAGTATACG
TATGAAGAAGCGAAAGAAACGATGCTGGAAAGTTTCCATCCGCTCGGTGAAGACTACAGATCGGTCGTCAGAGAAGGTCT
TGAGAACCGCTGGGTCGATGTACGTGAAAATAAAGGGAAACGTTCAGGAGCTTATTCATCGGGTTCATATGGAACAAATC
CTTACATCCTAATGAACTGGCAGGACAATGTCAGCAACTTATTTACGCTGGCGCATGAATTCGGTCACAGTGTGCACAGC
TATTATTCCCGTAAGTACCAGCCGTTCATCTACAGCGGCTACTCCATTTTCGTGGCGGAAGTTGCTTCAACTGTGAATGA
AGCGCTGCTGAATGACCACTTATTGAAAGTGACGAAAGATGAAGATCAAAGAATCTACTTACTGAACTATTGGCTCGACG
GATTCCGCGCAACGGTGTTCCGCCAGACGATGTTCGCTGAATTTGAGCATTTGATCCATACACTGGATCAGCAGGGTGTT
CCATTGACGGCTGAGAAGCTGACGGAAGAATATTATGCACTCAATGAAAAGTATTATGGTGATGCGATTGTCAGCGATGA
GGAAATTGGATTGGAATGGGCACGGATCCCGCATTTCTATATGAATTATTATGTTTATCAGTATGCGACAGGATACAGTG
CGGCAGTGGCATTGAGCAAACAGATTCTTGAAGAGGGCGAGCCGGCCGTCGAACGATATATCACGAACTTCCTGAAAGCA
GGATCTTCTGATTATCCGATAGAAGTGCTCAAAAAGGCGGGCGTTGATATGACGTCGGAAAAGCCAATCGAAGACGCGTG
CCGCGTATTTGAAGAACGTTTACTTGAATTAGAACAATTACTGGAAAATAGACAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(208-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.41

98.017

0.484

Multiple sequence alignment