Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SporoP33_RS07440 Genome accession   NZ_CP015027
Coordinates   1484652..1485602 (-) Length   316 a.a.
NCBI ID   WP_081243129.1    Uniprot ID   -
Organism   Sporosarcina sp. P33     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1479652..1490602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SporoP33_RS07415 (SporoP33_07365) - 1480167..1481309 (-) 1143 WP_369821971.1 MFS transporter -
  SporoP33_RS07420 (SporoP33_07370) - 1481506..1481847 (+) 342 WP_081243125.1 hypothetical protein -
  SporoP33_RS07425 (SporoP33_07375) - 1481967..1482929 (-) 963 WP_081243126.1 siderophore ABC transporter substrate-binding protein -
  SporoP33_RS07430 (SporoP33_07380) - 1482951..1483712 (-) 762 WP_081243127.1 ABC transporter ATP-binding protein -
  SporoP33_RS07435 (SporoP33_07385) - 1483709..1484659 (-) 951 WP_081243128.1 iron chelate uptake ABC transporter family permease subunit -
  SporoP33_RS07440 (SporoP33_07390) ceuB 1484652..1485602 (-) 951 WP_081243129.1 ABC transporter permease Machinery gene
  SporoP33_RS07445 (SporoP33_07395) - 1485901..1486761 (-) 861 WP_081243130.1 DUF6612 family protein -
  SporoP33_RS07450 (SporoP33_07400) hflX 1487029..1488297 (-) 1269 WP_081243131.1 GTPase HflX -
  SporoP33_RS07455 (SporoP33_07405) - 1488352..1489053 (-) 702 WP_196796891.1 VOC family protein -
  SporoP33_RS07460 (SporoP33_07410) - 1489237..1489704 (+) 468 WP_099662694.1 nucleoside deaminase -
  SporoP33_RS07465 (SporoP33_07415) nfsA 1489799..1490530 (+) 732 WP_081243134.1 oxygen-insensitive NADPH nitroreductase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34952.22 Da        Isoelectric Point: 10.2511

>NTDB_id=176247 SporoP33_RS07440 WP_081243129.1 1484652..1485602(-) (ceuB) [Sporosarcina sp. P33]
MKKRYLIPTVILLSLLSLFVGASRITPADLLDWRSEETEIFLISRVPRLVAILLAGAGMSIAGLIMQQLSRNKFVSPTTA
GTLDATKLGILVSMLIFTNATLLEKMAVSFTFALISTFLFMQILDRIKFKDAIFIPLVGLMFGNILSSISTFFAYKANVI
QNMSAWLQGDFSMIMKGRYELLYISIPVLIITYLYANRFTVAGMGEDFSKNLGLAYKRIVNTGLILVALITTTVVLTVGL
IPFLGLIIPNIVSIFKGDHLQKTLPHTALLGAIFLLICDILGRVIIFPYEISISLMVGVIGSGIFLYLLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=176247 SporoP33_RS07440 WP_081243129.1 1484652..1485602(-) (ceuB) [Sporosarcina sp. P33]
ATGAAGAAACGTTATTTAATTCCAACCGTTATTCTGCTCTCCCTCCTGTCGCTGTTTGTCGGTGCAAGCCGAATCACACC
AGCAGACTTATTGGATTGGCGTTCAGAAGAAACAGAGATTTTCTTAATTAGTCGGGTTCCCCGATTAGTCGCAATATTGC
TTGCTGGTGCAGGGATGAGTATTGCCGGGTTGATTATGCAGCAACTTAGCCGCAATAAATTTGTCTCCCCGACTACAGCA
GGTACATTAGACGCGACAAAGCTGGGAATTTTAGTGTCTATGTTAATTTTCACCAACGCAACATTATTGGAAAAAATGGC
CGTGTCATTTACATTTGCCTTGATCAGTACGTTCTTATTCATGCAAATCCTGGATCGTATTAAATTCAAAGATGCCATTT
TTATTCCGCTTGTTGGCTTAATGTTCGGGAATATTTTATCTTCCATTTCCACGTTTTTTGCATATAAAGCAAATGTGATA
CAGAATATGTCGGCTTGGCTTCAAGGTGACTTTTCCATGATCATGAAAGGGCGGTATGAGCTTTTGTATATCAGTATACC
GGTACTGATCATTACATATTTATATGCAAATCGTTTTACTGTGGCGGGAATGGGTGAAGATTTCTCCAAGAACCTCGGAC
TCGCGTATAAGCGTATCGTCAATACCGGATTGATTTTAGTCGCATTGATAACGACAACCGTAGTGCTGACGGTAGGTCTG
ATTCCTTTCTTAGGATTAATCATCCCGAACATCGTATCGATCTTTAAAGGAGACCATTTGCAAAAGACGCTGCCGCATAC
CGCATTACTTGGCGCTATTTTCCTTCTCATCTGTGACATTCTGGGCAGGGTTATTATTTTCCCATACGAGATCTCGATCA
GTTTAATGGTCGGCGTAATCGGAAGCGGAATCTTCCTGTACCTGTTGTTTAGGAGGAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.077

99.051

0.516

Multiple sequence alignment