Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SporoP33_RS00400 Genome accession   NZ_CP015027
Coordinates   71537..73237 (+) Length   566 a.a.
NCBI ID   WP_081241904.1    Uniprot ID   -
Organism   Sporosarcina sp. P33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 66537..78237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SporoP33_RS00375 (SporoP33_00380) - 67016..67258 (+) 243 WP_081241900.1 exodeoxyribonuclease VII small subunit -
  SporoP33_RS00380 (SporoP33_00385) - 67251..68135 (+) 885 WP_081241901.1 polyprenyl synthetase family protein -
  SporoP33_RS00385 (SporoP33_00390) dxs 68275..70173 (+) 1899 WP_081244695.1 1-deoxy-D-xylulose-5-phosphate synthase -
  SporoP33_RS00390 (SporoP33_00395) - 70170..70991 (+) 822 WP_081241902.1 TlyA family RNA methyltransferase -
  SporoP33_RS00395 (SporoP33_00400) ahrC 71070..71519 (+) 450 WP_081241903.1 transcriptional regulator AhrC/ArgR -
  SporoP33_RS00400 (SporoP33_00405) recN 71537..73237 (+) 1701 WP_081241904.1 DNA repair protein RecN Machinery gene
  SporoP33_RS00405 (SporoP33_00410) - 73348..74301 (+) 954 WP_081241905.1 SpoIVB peptidase S55 domain-containing protein -
  SporoP33_RS00410 (SporoP33_00415) spo0A 74528..75322 (+) 795 Protein_84 sporulation transcription factor Spo0A -
  SporoP33_RS00415 (SporoP33_00420) - 75594..77156 (+) 1563 WP_081241906.1 DUF342 domain-containing protein -
  SporoP33_RS00420 (SporoP33_00425) - 77149..77868 (+) 720 WP_081241907.1 glycerophosphodiester phosphodiesterase family protein -
  SporoP33_RS00425 (SporoP33_00430) - 77884..78126 (-) 243 WP_081241908.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 64076.01 Da        Isoelectric Point: 4.7865

>NTDB_id=176233 SporoP33_RS00400 WP_081241904.1 71537..73237(+) (recN) [Sporosarcina sp. P33]
MLSELSIKNFAIIEQLEIAFDDGLTVLTGETGAGKSIIIDAVQLLAGGRGSQEFIRHGAKKAELQGLFTIDNNIDAVTEK
LTEFGIDAEEGVVILRRDVNASGKSVCRVNGKLVTIAILREIGSLLIDIHGQHENQELMNEKRHIHLLDFFIGEPIDRAM
STYTELYEKYRKLQQLIAAKTQDEQQIAQKIDLYKFQLEEIDAANLVIGEEEELEAERVKLQHFNRLFDRLNTSYEALSL
ESHGLDWVGNSMSDLEEAASIDEELKTLSETVNSSFYALQDVSHDLKRQIDSMEFQPDRLDFVEERLALFLTLKRKYGKS
LEDILIYRDKIADALDQLVNRDERLHQNQELLAQYTEDLTIEANELSIIRKKAALSLEKGIEEQLKQLYMEKATFKVQIK
QKEPLQFDANGFDEVTFMISTNLGEPLKPLVRVASGGELSRMMLALKTIFSQHQGITSIIFDEVDTGVSGRVAQSIAEKI
SMISSHSQVLCISHLPQVAAMADHHYLIKKEVHDGRTTTAIHDVMQKERTEELSRMLSGAEITPLTLQHAEELLILAAQR
KQEFRK

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=176233 SporoP33_RS00400 WP_081241904.1 71537..73237(+) (recN) [Sporosarcina sp. P33]
TTGTTAAGCGAACTTTCGATTAAAAACTTTGCTATTATCGAACAGCTTGAAATCGCATTTGACGACGGACTGACTGTACT
GACCGGTGAAACAGGTGCAGGTAAGTCGATTATCATTGATGCTGTCCAACTTCTAGCAGGAGGCAGAGGTTCACAGGAAT
TCATTCGTCACGGCGCAAAAAAGGCCGAGCTTCAGGGCCTGTTTACAATCGATAATAATATCGATGCCGTGACGGAAAAG
CTGACAGAGTTCGGAATTGACGCAGAAGAAGGTGTTGTGATTTTACGCCGGGATGTGAACGCAAGCGGAAAGTCTGTATG
CCGTGTCAACGGCAAACTGGTCACTATTGCCATTTTGCGTGAAATCGGCTCCTTGCTGATCGATATACATGGCCAGCATG
AGAATCAGGAATTGATGAATGAAAAACGACATATTCATTTGCTTGATTTTTTTATTGGGGAACCAATTGACCGTGCGATG
TCCACGTATACTGAACTCTATGAGAAATATAGGAAGCTGCAGCAACTGATTGCGGCTAAAACACAGGATGAACAGCAAAT
CGCGCAAAAAATTGATTTATATAAGTTTCAGCTGGAAGAAATTGATGCGGCTAATTTAGTGATCGGCGAAGAAGAGGAAC
TGGAAGCCGAGCGTGTGAAGCTTCAGCATTTTAACCGCTTATTCGACCGCCTGAATACTTCATATGAAGCATTGTCCCTT
GAGTCGCACGGACTCGACTGGGTCGGCAATTCGATGAGTGACCTGGAAGAGGCAGCTTCGATTGATGAAGAGCTTAAAAC
ATTGTCGGAAACAGTCAATTCATCGTTTTATGCACTGCAAGATGTCTCACATGATCTGAAACGTCAGATCGACAGTATGG
AATTTCAGCCGGATCGTTTGGATTTTGTTGAAGAGCGGCTGGCGCTGTTTTTGACACTGAAACGAAAATACGGTAAATCG
CTGGAAGATATTTTAATTTATCGCGATAAAATTGCCGATGCACTGGATCAGCTGGTGAATCGCGATGAAAGATTGCATCA
AAACCAGGAATTGTTGGCACAATACACAGAAGATCTTACAATTGAAGCAAATGAATTATCCATTATCCGCAAAAAAGCAG
CCCTTTCCTTGGAAAAAGGGATAGAAGAGCAGCTAAAACAGCTTTATATGGAAAAAGCTACATTCAAAGTGCAAATAAAG
CAAAAAGAACCTCTGCAGTTTGATGCAAACGGATTTGATGAAGTGACGTTTATGATTTCCACTAACTTGGGTGAACCGCT
CAAGCCGTTGGTACGAGTGGCGTCTGGTGGCGAATTATCTCGAATGATGCTGGCGCTGAAGACGATTTTCTCACAGCATC
AAGGGATTACGTCAATTATTTTTGATGAAGTTGATACCGGTGTAAGCGGGCGGGTTGCTCAATCAATTGCAGAAAAAATT
TCCATGATCTCCAGTCATTCGCAAGTTCTTTGTATTTCACATCTGCCGCAAGTGGCTGCGATGGCGGACCATCATTACCT
CATTAAAAAAGAAGTGCACGACGGCCGGACGACGACTGCCATCCATGATGTGATGCAAAAAGAACGGACAGAAGAATTAT
CCCGCATGCTTTCTGGTGCGGAAATTACACCGCTGACGCTGCAGCACGCAGAGGAATTGCTCATTCTGGCGGCCCAGCGT
AAACAGGAATTCCGTAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.091

100

0.528

Multiple sequence alignment