Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   BTR42_RS04705 Genome accession   NZ_CP018822
Coordinates   903191..905398 (+) Length   735 a.a.
NCBI ID   WP_077496622.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus DSM 16831     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 898191..910398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTR42_RS04680 (BTR42_04360) miaA 898530..899417 (+) 888 WP_077496619.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  BTR42_RS04685 (BTR42_04365) hflX 899556..900794 (+) 1239 WP_003064155.1 GTPase HflX -
  BTR42_RS04690 (BTR42_04370) - 900787..901425 (+) 639 WP_061458492.1 hypothetical protein -
  BTR42_RS04695 (BTR42_04375) rnz 901465..902394 (+) 930 WP_009853926.1 ribonuclease Z -
  BTR42_RS04700 (BTR42_04380) - 902391..903149 (+) 759 WP_077496621.1 SDR family NAD(P)-dependent oxidoreductase -
  BTR42_RS04705 (BTR42_04385) recJ 903191..905398 (+) 2208 WP_077496622.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BTR42_RS04710 (BTR42_04390) - 905565..906830 (+) 1266 WP_009853929.1 DUF4352 domain-containing protein -
  BTR42_RS04715 (BTR42_04395) - 907029..907274 (+) 246 WP_009853930.1 hypothetical protein -
  BTR42_RS04720 (BTR42_04400) - 907365..908714 (-) 1350 WP_009853931.1 hypothetical protein -
  BTR42_RS04725 (BTR42_04405) - 908809..909591 (-) 783 WP_077496624.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 82296.89 Da        Isoelectric Point: 4.3942

>NTDB_id=176194 BTR42_RS04705 WP_077496622.1 903191..905398(+) (recJ) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
MITSKYNWKNIEKEPDNGFFELTKKEKLTELASQILYSRGVDTAEKLTQFLSTDLSQLHAPYLLHDMDKAVERIRQAIEN
YEQILVYGDYDADGMTSASIMKEALEMLGAEAQVYLPNRFTDGYGPNESVYKYFIEQQNVSLIITVDNGVAGHEAIAYAQ
SQGVDVIVTDHHGLPAELPEAFAIVHPEHPEADYPFKYLAGCGVAFKVACALLESIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKQTERIGLIELMKVSDVDMGDVNEETVGFKIAPQLNALGRLDDPNPAVELLTGFDDEEAHNIAKMINAKN
EERKEIVQKIFEEAMSMVDLEKPVQVLAKEGWHPGVLGIVAGRILEQIAQPVIVLNIEDGLAKGSARSIEAINIFHALDE
HRGLFEAFGGHAGAAGMTLVTENLDKLSQVLCDYIAENDIDLSQKKELVIDEVLELSEIDLDTVHSLEKLAPFGMDNPKP
VFEIKDFVVKQARTMGQNGAHLKLKIAQGTTAIDLVAFNQGHLAQEFQQAQNLCLATTLSINKWNGQTTVQLMLEDARVE
GVQLIDIRSKTASLPERVPVLAEDSTANEVVVLDIPDKAEELKSLFVGRHFEAVYFKNHIKRAYYLTGYGTRDQFAKLYK
TIYQFPEFDVRYKLKDLSQYLNIPDILLVKMIQIFDELDFVTITDGVMVVNKDAQKRSISESQIYQDLKQQVKFQELMAL
GTPQEIYDWLTDEDD

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=176194 BTR42_RS04705 WP_077496622.1 903191..905398(+) (recJ) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
ATGATAACAAGTAAATACAATTGGAAAAATATTGAAAAAGAGCCAGATAATGGCTTTTTTGAGCTGACAAAAAAAGAAAA
ACTAACAGAATTAGCTAGTCAGATTCTTTATAGCCGAGGTGTTGATACGGCAGAAAAATTGACTCAATTTTTATCAACGG
ATTTGTCACAATTGCATGCCCCTTACCTTTTACATGACATGGATAAAGCGGTTGAGCGTATTCGCCAAGCCATTGAGAAC
TACGAGCAAATTTTGGTTTATGGTGACTATGATGCTGACGGAATGACTAGTGCCAGTATTATGAAAGAAGCCCTTGAAAT
GTTAGGCGCTGAAGCTCAAGTTTATCTGCCAAATCGTTTCACAGACGGCTATGGTCCCAATGAATCGGTCTATAAATATT
TCATTGAGCAGCAAAACGTTTCTTTGATTATCACGGTGGACAATGGCGTAGCAGGGCACGAAGCGATTGCCTACGCACAA
AGTCAGGGGGTAGATGTCATTGTGACAGACCACCACGGCTTGCCAGCAGAGCTACCAGAAGCATTTGCGATTGTGCACCC
AGAACACCCAGAAGCTGATTATCCGTTCAAATATCTGGCTGGCTGTGGCGTTGCTTTCAAAGTCGCTTGTGCTTTGCTAG
AATCTATTCCGACAGAAATGCTTGATCTGGTGGCAATTGGAACAATTGCTGATATGGTGAGTTTGACTGATGAAAACCGT
ATTATGGTTAAAGTCGGACTTGAAATTCTGAAACAAACCGAACGCATTGGTCTGATTGAATTGATGAAAGTCTCAGACGT
GGATATGGGAGATGTCAATGAAGAAACGGTTGGTTTCAAAATTGCTCCGCAGCTAAATGCACTTGGTCGCCTAGATGACC
CAAATCCTGCTGTCGAATTATTGACTGGCTTTGATGACGAAGAAGCGCATAACATTGCCAAGATGATTAATGCTAAAAAC
GAAGAACGCAAGGAAATTGTTCAAAAAATCTTCGAAGAAGCCATGAGCATGGTTGATTTGGAAAAGCCAGTGCAAGTATT
GGCTAAAGAAGGTTGGCACCCAGGCGTTTTAGGAATTGTCGCAGGGCGTATTTTAGAACAAATCGCGCAGCCAGTGATTG
TTTTAAATATCGAAGATGGGCTTGCTAAAGGTTCAGCCAGAAGTATTGAGGCCATTAATATTTTCCATGCCCTTGATGAG
CACCGTGGCTTATTTGAAGCCTTTGGTGGACACGCTGGCGCTGCTGGAATGACTTTGGTGACTGAAAATCTTGATAAATT
ATCACAAGTTTTGTGTGATTATATTGCTGAAAATGATATTGACCTATCACAGAAAAAAGAGCTTGTTATTGATGAGGTTC
TGGAGCTATCAGAGATTGACCTTGATACCGTGCACAGTCTTGAAAAATTGGCACCATTTGGCATGGACAATCCAAAACCA
GTCTTTGAAATTAAAGATTTTGTGGTGAAACAAGCACGCACCATGGGACAAAATGGTGCGCATTTAAAATTAAAAATTGC
CCAAGGCACAACGGCAATTGACCTTGTTGCCTTTAATCAAGGACATCTAGCGCAGGAATTTCAACAAGCGCAAAATCTTT
GCCTTGCAACGACCTTATCGATTAATAAGTGGAATGGGCAAACGACTGTTCAATTAATGTTGGAAGATGCGCGTGTTGAG
GGTGTTCAGTTGATTGATATTCGCTCCAAAACAGCTAGCCTTCCAGAACGTGTTCCAGTATTGGCTGAAGATAGCACGGC
AAATGAAGTTGTGGTGTTAGACATTCCTGATAAGGCTGAAGAATTGAAATCACTCTTTGTCGGTCGTCATTTTGAAGCCG
TTTATTTTAAAAATCATATTAAACGTGCTTATTATCTGACAGGCTATGGCACACGTGACCAATTTGCTAAGCTTTATAAA
ACTATCTATCAATTCCCAGAATTTGATGTCCGCTACAAGTTGAAAGATTTGAGTCAATACCTTAATATCCCTGATATTTT
ACTCGTTAAAATGATTCAGATTTTTGATGAATTAGATTTTGTAACCATCACAGATGGTGTTATGGTCGTCAACAAAGATG
CCCAGAAACGCAGTATTTCAGAAAGCCAAATCTACCAAGACCTCAAACAACAAGTTAAATTCCAAGAGCTAATGGCGCTC
GGAACCCCACAAGAAATTTACGATTGGCTGACTGATGAAGATGACTAA

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-433)

RecJ OB domain (RecJ_OB)

(450-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-730)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.703

100

0.682
  recJ Bacillus subtilis subsp. subtilis str. 168

38.273

100

0.404

Multiple sequence alignment