Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   BTR42_RS04655 Genome accession   NZ_CP018822
Coordinates   889047..892289 (+) Length   1080 a.a.
NCBI ID   WP_077496613.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus DSM 16831     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 884047..897289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTR42_RS04635 (BTR42_04315) - 884072..884482 (+) 411 WP_074656786.1 MerR family transcriptional regulator -
  BTR42_RS04640 (BTR42_04320) pheS 884818..885861 (+) 1044 WP_013642932.1 phenylalanine--tRNA ligase subunit alpha -
  BTR42_RS04645 (BTR42_04325) - 885897..886421 (+) 525 WP_077496609.1 GNAT family N-acetyltransferase -
  BTR42_RS04650 (BTR42_04330) pheT 886492..888897 (+) 2406 WP_077496611.1 phenylalanine--tRNA ligase subunit beta -
  BTR42_RS04655 (BTR42_04335) rexB 889047..892289 (+) 3243 WP_077496613.1 ATP-dependent nuclease subunit B Machinery gene
  BTR42_RS04660 (BTR42_04340) rexA 892279..895911 (+) 3633 WP_077496615.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  BTR42_RS04665 (BTR42_04345) - 896016..897161 (-) 1146 WP_077496617.1 cobalamin-independent methionine synthase II family protein -

Sequence

Protein


Download         Length: 1080 a.a.        Molecular weight: 123881.26 Da        Isoelectric Point: 5.0944

>NTDB_id=176192 BTR42_RS04655 WP_077496613.1 889047..892289(+) (rexB) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
MKLLYTDIQYDMTEILVGEAVAQADAGKRVFYIAPNSLSFEKERAVLELLPDEASFAITVTRFAQMARYFVLNEAQVKES
IDDNGLAMIFYRALSHFSDTDLKVFGRLKQDTNFVKQLVDLYKELKTANMTVLDLTELHSAEKQEDLVKIFLAVNDILLA
NQYDNQSKIAYFAKQVEAGHLDATLENVSLVIDGFTRFSAEEEYLVSLLEEKCAQVIIGTYSSQKAYRAAFSTGNVYQAS
LDFLRGLAAKFHAQPQCVESSQKSHEAFSKLSKLFEAKHDFTSSDVTLTADDKKHYAIWDVINQKEEVEHVAKAIRHKLY
QGYRYKDILVLLGDVDSYRLQIGKIFDKYDIPYYFGKAESMSDHPLVHFIDSLERVKRYRFRTEDVVNLLKTGLYGNFKQ
EDLDLFEQYLIYADIKGQSKFAKEFTIVYKGKKHLAFVNRMREQIMTPLLALFKAQKQRGSSLLEKLMTFLHAIHLPDNL
EGMVATFSENEQEKHEQVWRTFTGILTQFQTIFGQEKLSLDDCLSLIRSGMLAAQYRVVPATVDVVSVKSYDLVEPHTNK
FVFALGMTQAHFPKIAQNSSLISDEERAQINESTDDNQRFDIVSRENIKKNHFAALSLFNSATEELVLSLPQIANEAEDT
ESSYLTELASFGVPVLAKGRNRLSTGAEDIGNYKALLSRVIEVNRLAIEEERELSKEEQTFWSVAVRYLRKKLAAEGIEL
PLIKDNMQTKTVSADVIEARFPSDEPISLSSSAVTTFYNNQYKYFLQYVLGLQEVETIHPDARNHGTYLHRVFELVMKDD
SNHSFDSKLDKAIQTTNLEDDFKFVYEEDEESRYSLTVLEDIARSTATILRDDAQIQVESEEETFELMIANSVRIRGIID
RVDRLSDGSLGIVDYKSSRNTFDIQKFYNGLSPQLVTYVQALRDKKGLSESEHIFGAMYLHMQEPKVDLSSVATTEKILE
NLAKELTYRGLFLEDEKAYLANGRYHLNDSLYSQEELDILLAYNQNLYLKAAEQIKKGHFLINPYSEDGKSVQGDQLKAI
TRFEADRHMPYARKWYKLPRKDRRQGFLSLMQEEEETDDL

Nucleotide


Download         Length: 3243 bp        

>NTDB_id=176192 BTR42_RS04655 WP_077496613.1 889047..892289(+) (rexB) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
ATGAAATTACTATACACAGATATTCAGTATGATATGACTGAGATTTTAGTTGGAGAGGCAGTAGCGCAGGCAGATGCTGG
CAAGCGTGTTTTTTACATTGCTCCCAACTCTTTATCTTTTGAAAAAGAAAGAGCAGTTTTGGAGTTGTTACCAGACGAAG
CTTCTTTTGCGATTACGGTAACACGTTTTGCTCAAATGGCTCGTTATTTTGTGTTAAATGAAGCGCAGGTCAAGGAAAGC
ATTGATGACAATGGCTTGGCTATGATTTTTTACCGTGCTTTGTCACATTTTTCAGATACGGATTTGAAAGTTTTTGGGCG
TTTGAAGCAGGATACGAATTTTGTCAAGCAGTTGGTTGATTTGTACAAAGAATTAAAAACGGCTAACATGACTGTGCTTG
ATTTGACAGAATTGCATTCAGCGGAGAAGCAGGAAGATTTGGTGAAAATCTTTTTAGCGGTTAATGATATTTTGCTTGCC
AATCAGTATGATAATCAGAGCAAGATTGCTTATTTTGCAAAGCAGGTTGAGGCAGGACATTTGGATGCTACGCTTGAAAA
TGTGAGCCTTGTCATTGACGGTTTTACACGCTTTTCAGCAGAAGAAGAGTATCTAGTAAGCTTGCTTGAAGAAAAATGTG
CGCAAGTGATTATCGGAACTTACAGTAGTCAAAAGGCGTATAGAGCGGCATTTTCGACGGGAAATGTTTACCAAGCGAGT
TTAGATTTCTTGCGTGGTTTAGCGGCTAAATTCCATGCGCAACCGCAGTGTGTTGAAAGTTCTCAGAAATCTCACGAGGC
TTTTTCAAAATTATCAAAATTATTCGAAGCAAAGCACGACTTTACGAGTTCAGATGTGACGCTGACGGCTGATGATAAAA
AACATTACGCTATTTGGGATGTCATTAATCAGAAAGAAGAGGTCGAGCATGTGGCGAAAGCTATTCGTCATAAGCTTTAT
CAAGGGTATCGTTACAAGGATATTTTAGTGCTCTTAGGTGATGTGGACAGCTATCGTTTGCAAATTGGCAAGATTTTTGA
CAAATATGACATTCCTTATTATTTCGGAAAAGCGGAGTCAATGAGTGACCACCCTTTGGTGCATTTTATTGATTCGTTGG
AGCGTGTGAAGCGTTATCGTTTTCGTACCGAAGATGTCGTTAATCTGTTAAAAACAGGGCTTTATGGAAATTTCAAGCAA
GAAGATTTAGACCTTTTTGAGCAATATTTGATTTATGCTGATATTAAGGGACAAAGCAAATTTGCTAAGGAATTCACGAT
TGTTTATAAAGGAAAAAAACATTTAGCCTTTGTTAATCGCATGCGCGAGCAAATCATGACGCCTTTACTTGCTTTATTTA
AGGCGCAAAAGCAACGTGGCTCTAGTTTGCTTGAGAAATTAATGACATTTTTACACGCCATTCATTTGCCTGATAATCTA
GAAGGCATGGTAGCGACTTTTTCAGAAAATGAACAAGAAAAGCATGAGCAAGTTTGGCGGACATTTACAGGGATTTTAAC
GCAATTTCAAACGATTTTTGGGCAAGAAAAGTTATCGTTGGATGACTGTTTGTCCTTGATTCGCAGCGGAATGTTAGCTG
CGCAGTACCGTGTGGTGCCTGCAACGGTTGATGTTGTTTCGGTCAAATCTTATGATTTGGTGGAACCGCACACCAATAAA
TTTGTCTTTGCTTTGGGCATGACGCAGGCACATTTTCCAAAAATTGCGCAAAATAGTAGTCTGATTTCAGATGAAGAACG
TGCCCAAATCAACGAATCAACTGATGATAATCAACGTTTTGATATTGTTAGTCGCGAAAATATCAAGAAAAATCATTTTG
CTGCCCTATCATTATTTAACTCGGCGACAGAAGAATTGGTGCTTAGTCTGCCACAAATTGCCAACGAAGCCGAAGATACG
GAATCTTCTTACTTAACCGAATTAGCTAGCTTTGGTGTGCCAGTTCTTGCTAAAGGTCGTAATCGTTTGTCAACGGGTGC
TGAGGACATTGGCAATTATAAGGCTTTATTGTCGCGCGTGATTGAAGTCAATCGTTTGGCGATTGAAGAAGAGCGTGAAC
TTAGCAAGGAAGAGCAAACTTTCTGGTCAGTTGCTGTTCGTTATCTTCGAAAAAAATTGGCAGCAGAAGGTATTGAATTG
CCACTGATTAAGGATAATATGCAAACTAAGACGGTCTCTGCCGACGTGATTGAGGCACGTTTTCCAAGTGATGAGCCGAT
TTCGTTATCATCATCTGCAGTCACTACCTTCTACAATAATCAGTATAAATATTTCTTGCAATATGTTCTTGGCTTGCAAG
AGGTTGAGACGATTCACCCAGATGCCAGAAATCATGGTACCTACCTGCACCGTGTTTTTGAATTGGTCATGAAAGATGAT
TCAAACCATTCTTTTGATAGCAAACTTGATAAAGCTATTCAAACAACGAATTTGGAAGACGATTTCAAATTTGTTTACGA
AGAAGATGAAGAAAGTCGTTATTCTTTGACTGTCTTGGAAGATATTGCTAGAAGTACAGCAACGATTTTACGTGATGATG
CTCAGATTCAAGTTGAAAGTGAAGAAGAAACGTTTGAATTAATGATTGCAAATAGTGTTCGTATCAGAGGAATTATTGAC
CGTGTTGACCGCTTATCAGACGGCAGTCTTGGCATTGTGGATTATAAATCAAGTCGCAATACTTTTGATATTCAGAAGTT
CTACAATGGTTTAAGTCCGCAATTGGTGACTTATGTGCAAGCTTTGCGTGATAAAAAAGGCTTGAGCGAGTCGGAGCATA
TTTTTGGTGCTATGTATTTGCATATGCAAGAGCCAAAAGTTGATTTGTCATCGGTGGCTACGACAGAGAAAATTTTAGAA
AATTTGGCTAAAGAGTTGACTTATCGTGGTCTATTCTTGGAAGATGAAAAAGCGTATTTAGCCAATGGTCGCTATCATCT
GAATGATTCGCTTTACAGTCAAGAAGAACTTGATATTTTGCTAGCTTATAATCAAAACTTATATCTGAAAGCAGCAGAGC
AGATTAAGAAGGGGCATTTCTTGATTAATCCTTATAGTGAGGATGGCAAGTCAGTTCAAGGAGACCAATTGAAGGCAATC
ACACGATTTGAGGCTGACCGCCATATGCCTTATGCTCGCAAATGGTATAAATTACCAAGAAAAGATAGACGTCAAGGCTT
TTTGAGCCTAATGCAAGAAGAGGAGGAAACAGATGATCTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1026)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.074

100

0.441