Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AOC10_RS08200 Genome accession   NZ_CP015018
Coordinates   1638820..1640184 (-) Length   454 a.a.
NCBI ID   WP_071461982.1    Uniprot ID   -
Organism   Polynucleobacter asymbioticus strain Tro8F10W22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1633820..1645184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOC10_RS08185 (AOC10_08130) dapD 1635884..1636711 (+) 828 WP_011903295.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -
  AOC10_RS08190 (AOC10_08135) dapE 1636722..1637873 (+) 1152 WP_011903296.1 succinyl-diaminopimelate desuccinylase -
  AOC10_RS08195 (AOC10_08140) prmB 1637911..1638807 (+) 897 WP_011903297.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  AOC10_RS08200 (AOC10_08145) radA 1638820..1640184 (-) 1365 WP_071461982.1 DNA repair protein RadA Machinery gene
  AOC10_RS08205 (AOC10_08150) - 1640239..1640670 (-) 432 WP_223245969.1 hypothetical protein -
  AOC10_RS08210 (AOC10_08155) - 1640745..1642586 (-) 1842 WP_048812277.1 potassium transporter Kup -
  AOC10_RS11300 - 1642585..1642746 (+) 162 WP_201721397.1 hypothetical protein -
  AOC10_RS08220 (AOC10_08165) - 1643018..1643389 (-) 372 WP_011903301.1 hypothetical protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48289.13 Da        Isoelectric Point: 7.3470

>NTDB_id=176136 AOC10_RS08200 WP_071461982.1 1638820..1640184(-) (radA) [Polynucleobacter asymbioticus strain Tro8F10W22]
MAKVKTIYICQSCGGTSAKWQGQCPSCQAWNTLEEGLPETTSNARFQGLAQSLPRQKLSAITAEDLPRFSTGVEEFDRVL
GGGLVPGGVVLLGGDPGIGKSTLLLQALAEMSSVGMNVLYSSGEESAAQIALRAKRIALDAPQLEVLAEIQLEKLISIMD
TVKPQVLVVDSIQTLYSEVLSSAPGSVAQVRECAAQLTRAAKSSGICVLMVGHVTKDGHLAGPRVLEHIVDTVLYFEGDT
HSSFRLVRSIKNRFGAVNELGVFAMTEKGLRGVTNPSAIFLSQHEQMVPGACVLVTQEGSRPLLVEIQALVDTAHVPNPR
RLAVGLEQARLAMLLAVLHRHAGIACFDQDVFLNAVGGVKISEPAADLAVLLAIQSSIRNRALPKELIVFGEVGLAGEIR
PCPRGQERLKEAAKLGFTVAIIPKANMPKTKIPGLKVIPVERIDQAIAAAAELN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=176136 AOC10_RS08200 WP_071461982.1 1638820..1640184(-) (radA) [Polynucleobacter asymbioticus strain Tro8F10W22]
TTGGCTAAAGTCAAAACGATTTATATCTGCCAGTCCTGTGGTGGCACCTCTGCTAAATGGCAAGGTCAGTGTCCCTCATG
CCAAGCTTGGAACACTCTAGAAGAGGGTTTGCCAGAGACCACTTCGAATGCGCGTTTTCAGGGTTTGGCACAATCACTGC
CAAGGCAAAAATTGTCGGCCATTACTGCGGAAGATTTGCCGAGATTTAGTACTGGAGTAGAAGAGTTTGACCGCGTCTTA
GGTGGCGGATTGGTGCCCGGTGGAGTAGTTCTTTTGGGTGGTGATCCCGGCATTGGTAAATCTACTTTACTGTTGCAGGC
TTTAGCTGAGATGAGTTCTGTTGGTATGAATGTTCTCTACAGCAGCGGTGAAGAATCTGCGGCTCAAATTGCACTTCGTG
CAAAACGGATTGCCTTGGATGCACCTCAATTAGAAGTGTTGGCGGAAATTCAGTTAGAAAAACTCATTTCGATTATGGAT
ACCGTCAAGCCACAAGTGTTAGTGGTCGACTCTATTCAAACCTTGTATTCAGAAGTATTAAGTTCTGCACCGGGATCCGT
TGCTCAGGTCAGAGAGTGCGCAGCGCAATTAACTCGAGCAGCTAAATCGAGTGGAATTTGTGTATTGATGGTTGGACATG
TCACTAAAGATGGACATTTGGCGGGCCCTCGTGTCTTAGAGCACATTGTTGATACCGTCCTTTATTTTGAGGGCGATACT
CACTCTTCTTTCCGCCTAGTTCGCTCTATCAAGAATCGTTTTGGCGCAGTAAATGAGTTGGGCGTTTTCGCGATGACCGA
AAAAGGTTTGCGCGGAGTCACCAATCCTTCGGCTATATTCCTGTCACAGCACGAACAGATGGTGCCGGGCGCTTGTGTGT
TGGTTACGCAAGAGGGTAGTAGACCGCTTTTAGTCGAAATTCAGGCTTTAGTAGATACAGCACACGTTCCAAACCCGCGG
CGTTTAGCGGTTGGTCTAGAGCAAGCGCGTTTGGCAATGTTGTTAGCAGTTTTACATCGCCATGCTGGCATCGCCTGTTT
TGATCAAGATGTTTTCTTAAATGCGGTAGGTGGAGTCAAAATTTCTGAGCCCGCCGCTGACTTAGCGGTGCTGCTTGCTA
TTCAGTCATCTATTCGTAATCGTGCTTTACCTAAAGAGTTGATTGTTTTTGGTGAGGTAGGTTTGGCTGGAGAGATCCGT
CCTTGCCCGCGCGGGCAAGAGCGCTTAAAAGAGGCTGCTAAGTTGGGTTTTACCGTTGCCATTATTCCAAAAGCAAACAT
GCCCAAGACCAAAATACCTGGATTGAAAGTGATTCCGGTAGAGCGAATTGATCAGGCTATCGCAGCAGCTGCCGAACTTA
ATTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(358-450)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(78-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.336

99.559

0.491
  radA Streptococcus pneumoniae Rx1

46.222

99.119

0.458
  radA Streptococcus pneumoniae D39

46.222

99.119

0.458
  radA Streptococcus pneumoniae R6

46.222

99.119

0.458
  radA Streptococcus pneumoniae TIGR4

46.222

99.119

0.458
  radA Streptococcus mitis NCTC 12261

46.222

99.119

0.458
  radA Streptococcus mitis SK321

46.222

99.119

0.458

Multiple sequence alignment