Detailed information NTG0176130

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: AOC25_RS10980
• Genome accession: NZ_CP015017
• Coordinates: 2190619..2191509 (+)
• Length: 296 a.a.
• NCBI ID: WP_071539811.1
• Uniprot ID: -
• Organism: Polynucleobacter asymbioticus strain MWH-RechtKol4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2185619..2196509

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOC25_RS10950 (AOC25_10900)	pth	2185827..2186417 (+)	591	WP_011903757.1	aminoacyl-tRNA hydrolase	-
AOC25_RS10955 (AOC25_10905)	-	2186423..2186689 (-)	267	WP_071539808.1	YfhL family 4Fe-4S dicluster ferredoxin	-
AOC25_RS10960 (AOC25_10910)	coaD	2186707..2187204 (-)	498	WP_071539809.1	pantetheine-phosphate adenylyltransferase	-
AOC25_RS10965 (AOC25_10915)	rsmD	2187241..2187831 (-)	591	WP_011903760.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
AOC25_RS10970 (AOC25_10920)	-	2187851..2189188 (-)	1338	WP_071539810.1	M16 family metallopeptidase	-
AOC25_RS10975 (AOC25_10925)	-	2189188..2190555 (-)	1368	WP_011903762.1	M16 family metallopeptidase	-
AOC25_RS10980 (AOC25_10930)	pilA	2190619..2191509 (+)	891	WP_071539811.1	signal recognition particle-docking protein FtsY	Machinery gene
AOC25_RS10985 (AOC25_10935)	rpoH	2191602..2192531 (+)	930	WP_011903764.1	RNA polymerase sigma factor RpoH	-
AOC25_RS10990 (AOC25_10940)	-	2192553..2193143 (-)	591	WP_071539812.1	SCO family protein	-
AOC25_RS10995 (AOC25_10945)	cyoE	2193145..2194038 (-)	894	WP_071539813.1	heme o synthase	-
AOC25_RS11000 (AOC25_10950)	-	2194035..2195165 (-)	1131	WP_071539814.1	COX15/CtaA family protein	-
AOC25_RS11005 (AOC25_10955)	-	2195165..2195821 (-)	657	WP_011903768.1	hypothetical protein	-

Sequence

Protein

• Length: 296 a.a.
• Molecular weight: 31530.14 Da
• Isoelectric Point: 6.9753

>NTDB_id=176130 AOC25_RS10980 WP_071539811.1 2190619..2191509(+) (pilA) [Polynucleobacter asymbioticus strain MWH-RechtKol4]
MFGLRKTLGSLFKTSKTDEAWFDTLEESLIQSDVGLPTTEQLIIKLRKAAKSDKASSPEELQALLIQEVSTLLGSLEPNP
NPLFTDQKIHIPEVWLVVGVNGAGKTTTIGKLCKLFQSQGKSVLLAAGDTFRAAARNQLQEWGGRNQVDVITQDGGDAAA
VAHDAIHAANSRKSDILIIDTAGRLATQDHLMEELKKVKRVIGKALPGAPHHTLLVLDGNTGQNGLSQVKAFHAALGLTG
LIVTKLDGTAKGGVICALAHTLKDEPKPAVLALGKGEGIDDLVPFTAHQYSSELFN

Nucleotide

• Length: 891 bp

>NTDB_id=176130 AOC25_RS10980 WP_071539811.1 2190619..2191509(+) (pilA) [Polynucleobacter asymbioticus strain MWH-RechtKol4]
ATGTTCGGCCTACGTAAAACCCTCGGATCCCTATTCAAAACCAGCAAGACGGATGAAGCTTGGTTTGATACTTTAGAAGA
GTCACTCATTCAAAGTGATGTGGGTCTCCCCACAACTGAACAATTGATTATCAAATTACGTAAAGCTGCAAAATCTGATA
AAGCATCCAGCCCAGAAGAGCTCCAGGCACTCCTCATACAAGAAGTGAGTACCTTACTAGGTTCACTAGAACCAAATCCA
AACCCATTATTTACAGATCAGAAGATCCATATTCCCGAGGTTTGGTTGGTAGTAGGGGTGAATGGTGCAGGCAAAACCAC
CACTATTGGCAAGTTATGCAAGCTCTTTCAATCTCAAGGTAAATCGGTATTACTGGCAGCTGGCGACACTTTTAGGGCGG
CCGCTAGAAATCAACTTCAAGAATGGGGTGGCAGAAATCAAGTGGATGTCATCACTCAAGATGGTGGTGACGCAGCTGCC
GTAGCCCATGATGCAATTCATGCGGCCAACTCTCGCAAGAGTGACATCTTAATTATTGATACAGCGGGACGACTGGCTAC
CCAAGATCACCTCATGGAAGAGCTCAAAAAAGTGAAGCGGGTGATTGGCAAGGCGCTTCCTGGCGCCCCTCACCACACCC
TACTGGTACTAGATGGCAACACAGGACAGAATGGTTTAAGCCAGGTAAAGGCCTTTCATGCAGCCCTGGGACTTACAGGG
CTCATTGTTACTAAGTTAGATGGCACCGCCAAAGGGGGTGTCATTTGCGCCCTTGCTCACACTCTGAAAGATGAACCCAA
ACCGGCTGTTTTAGCCCTAGGCAAAGGTGAAGGAATTGATGATTTAGTGCCTTTCACAGCCCACCAGTATTCATCTGAAT
TATTCAATTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (92-295)

• SRP54-type protein, helical bundle domain (SRP54_N) (4-68)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.584	98.986	0.53