Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   BTV21_RS03405 Genome accession   NZ_CP018808
Coordinates   752463..754655 (-) Length   730 a.a.
NCBI ID   WP_075293720.1    Uniprot ID   A0A9Q6YYI8
Organism   Histophilus somni strain USDA-ARS-USMARC-63374     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 747463..759655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTV21_RS03385 (BTV21_03385) - 749011..750066 (+) 1056 WP_011609282.1 rod shape-determining protein -
  BTV21_RS03390 (BTV21_03390) mreC 750148..751203 (+) 1056 WP_075293718.1 rod shape-determining protein MreC -
  BTV21_RS03395 (BTV21_03395) mreD 751203..751691 (+) 489 WP_011609280.1 rod shape-determining protein MreD -
  BTV21_RS03400 (BTV21_03400) - 751717..752391 (-) 675 WP_087437276.1 SPOR domain-containing protein -
  BTV21_RS03405 (BTV21_03405) priA 752463..754655 (-) 2193 WP_075293720.1 primosomal protein N' Machinery gene
  BTV21_RS03410 (BTV21_03410) mazG 754660..755469 (-) 810 WP_075293721.1 nucleoside triphosphate pyrophosphohydrolase -
  BTV21_RS10200 - 755983..756282 (+) 300 WP_198351452.1 hypothetical protein -
  BTV21_RS10205 - 756465..756704 (+) 240 WP_198351451.1 hypothetical protein -
  BTV21_RS03420 (BTV21_03420) - 756979..757380 (+) 402 WP_075293722.1 carboxymuconolactone decarboxylase family protein -
  BTV21_RS03425 (BTV21_03425) - 757370..758599 (+) 1230 WP_075293723.1 MFS transporter -
  BTV21_RS10080 - 758662..758778 (-) 117 Protein_659 nucleoside triphosphate pyrophosphohydrolase -
  BTV21_RS03435 (BTV21_03435) uspA 758947..759372 (+) 426 WP_011609276.1 universal stress protein UspA -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 83523.11 Da        Isoelectric Point: 9.7467

>NTDB_id=176103 BTV21_RS03405 WP_075293720.1 752463..754655(-) (priA) [Histophilus somni strain USDA-ARS-USMARC-63374]
MKLARVALAVPLFSFFDYLIPNALSTAVGCRVLVPFGRQKLIGIVTELPEKTEIDISQLKPIISVLDHHSVFTPELWHLL
HWGADYYQFPLGEVLISSLPSKLRRGESAVEKSTFFFQLTEQGQQALDNNKLKRAKKQLEALHYLQNNITEKNNNPFHNQ
VWSTLKSKGYISEQEIHKTSISWQQKLNHQSIVKTNDRLPLNQEQALALSQLTFQSGFICWLLEGVTGSGKTEIYLQFIE
EILQQEKQILVLVSEIGLTPQTVQRFQARFNIEIDVLHSNLNDNQRLKVWQRSKNGESAVIIGTRSALFTPFKQLGLIIV
DEEHDLSFKQQDNWRYHARDLAVVYAKQLDIPIVLGSATPSLESINNVRQGKYRHITLKKRARNTTALRHSVIDLKRQIV
HNGLSETLLTMMKNHLKKGNQVLLFLNRRGFAPVLLCHECGWIVECQHCEKPYTYHQHQRVLRCHHCGTQKPIPMQCVNC
GSTHLVTTGLGTEQLEGSLNQRFPNYKITRIDRDSTARKGKLEQYLRDIQLGKSQILIGTQMLAKGHHFPNVTLVALLNV
DSALFSTDFRAEERLAQLYVQVAGRAGREEKQGEVVLQTHYPEHPLLVSLLSQGYPYFAQQALTLRNQMGLPPFSAQALF
KAQSRHSQKAEEVLHQIAAYFHNTSSKNLQILGPIQAPFSKKAGQYRWHLLLQHKSKAELQQILHSFQQENFLRLQQVRL
VLDIDPLDLS

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=176103 BTV21_RS03405 WP_075293720.1 752463..754655(-) (priA) [Histophilus somni strain USDA-ARS-USMARC-63374]
ATGAAACTTGCACGAGTTGCTCTTGCCGTTCCTCTGTTTAGTTTTTTTGATTATCTTATTCCAAATGCCCTTTCAACCGC
TGTCGGCTGTCGAGTATTAGTCCCTTTCGGACGACAAAAATTAATTGGTATTGTCACTGAGTTACCTGAAAAAACGGAGA
TAGATATTTCACAACTCAAACCCATTATCTCCGTTCTTGATCATCATTCTGTTTTTACCCCTGAATTATGGCATCTACTA
CATTGGGGAGCGGACTATTATCAATTTCCCTTAGGAGAAGTATTAATAAGCAGCTTGCCAAGCAAATTACGCCGTGGTGA
AAGTGCGGTAGAAAAATCAACATTTTTCTTTCAACTAACGGAACAGGGGCAACAAGCATTAGACAACAACAAATTAAAAA
GAGCAAAAAAACAGCTTGAGGCTCTACATTATCTACAAAACAATATCACAGAAAAAAATAACAATCCTTTTCATAACCAA
GTTTGGAGCACCTTAAAAAGTAAGGGATATATATCTGAACAAGAAATACATAAAACAAGTATCTCTTGGCAACAAAAATT
AAATCATCAATCTATTGTAAAAACTAACGATCGCCTTCCCCTTAACCAAGAGCAAGCTCTTGCACTCAGCCAATTAACCT
TTCAATCCGGATTTATCTGTTGGTTATTAGAAGGCGTAACCGGTTCAGGAAAAACAGAAATCTATCTTCAATTTATTGAG
GAAATTTTACAACAAGAGAAACAAATTTTAGTACTGGTATCGGAAATTGGTCTCACGCCACAAACAGTACAACGCTTTCA
AGCGAGATTTAATATTGAAATTGATGTGTTACATTCAAATTTAAATGATAACCAACGTTTGAAAGTATGGCAACGTTCTA
AAAATGGCGAAAGTGCGGTCATCATCGGCACGAGATCAGCACTATTTACTCCCTTTAAACAACTGGGGCTAATTATCGTT
GATGAAGAACATGATCTTTCATTTAAACAACAAGATAACTGGCGTTATCATGCTCGTGATCTTGCAGTAGTTTACGCTAA
ACAATTGGATATTCCTATCGTGTTAGGATCTGCAACGCCAAGTTTGGAAAGCATCAATAATGTACGACAAGGCAAATATC
GTCACATCACACTCAAAAAAAGAGCAAGAAATACTACCGCACTTCGTCATTCGGTTATCGACCTAAAGCGACAAATAGTA
CATAACGGTTTATCTGAAACCTTGTTGACAATGATGAAAAATCACTTAAAAAAGGGAAATCAGGTTTTATTGTTCTTAAA
CCGCCGTGGTTTCGCACCTGTTCTACTTTGTCATGAATGTGGCTGGATTGTAGAATGCCAACATTGTGAAAAGCCTTATA
CTTATCATCAACATCAGCGAGTTCTACGTTGCCACCATTGCGGAACACAAAAGCCTATTCCAATGCAATGTGTAAATTGC
GGCTCGACACATTTAGTGACGACAGGTTTAGGAACAGAACAATTGGAAGGAAGTTTAAACCAACGTTTTCCAAACTATAA
GATTACCCGTATTGACAGAGATAGTACCGCTCGCAAAGGAAAATTGGAACAATATCTACGGGATATTCAATTAGGCAAAA
GCCAAATTTTAATTGGTACACAAATGCTAGCCAAGGGGCATCATTTCCCCAATGTAACTTTAGTGGCACTGTTAAACGTG
GATAGTGCACTTTTTTCTACTGATTTTCGGGCAGAAGAACGTTTAGCCCAACTTTATGTTCAAGTTGCAGGACGAGCCGG
ACGAGAAGAAAAACAAGGAGAGGTCGTCTTGCAAACCCACTATCCGGAACATCCTTTATTGGTTAGTTTATTAAGTCAAG
GTTATCCTTACTTTGCCCAACAAGCCCTCACTTTGCGTAACCAAATGGGGTTACCGCCTTTCAGTGCTCAAGCACTGTTT
AAAGCCCAAAGTCGCCACTCACAAAAAGCTGAGGAAGTGTTACACCAAATTGCCGCCTATTTTCATAATACCTCAAGCAA
AAACTTGCAAATCTTGGGGCCTATCCAAGCACCTTTTAGCAAAAAAGCGGGGCAATATCGCTGGCACCTTTTATTACAAC
ATAAATCCAAAGCAGAATTACAACAAATTTTACACTCTTTTCAGCAAGAAAATTTTTTAAGATTACAACAAGTGCGGTTA
GTTTTAGATATAGATCCGCTGGATTTGAGCTAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(222-366)

Primosomal protein N C-terminal domain (PriA_C)

(633-726)

Helicase conserved C-terminal domain (Helicase_C)

(498-588)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-100)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(446-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q6YYI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

42.588

100

0.433