Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | A3772_RS13900 | Genome accession | NZ_CP015004 |
| Coordinates | 2631992..2632402 (-) | Length | 136 a.a. |
| NCBI ID | WP_009967785.1 | Uniprot ID | A0A6I4D881 |
| Organism | Bacillus subtilis strain SZMC 6179J isolate B23 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2627358..2678848 | 2631992..2632402 | within | 0 |
Gene organization within MGE regions
Location: 2627358..2678848
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A3772_RS13875 (A3772_13875) | yqeF | 2627525..2628256 (-) | 732 | WP_003229964.1 | SGNH/GDSL hydrolase family protein | - |
| A3772_RS13880 (A3772_13880) | cwlH | 2628508..2629260 (-) | 753 | WP_003229963.1 | N-acetylmuramoyl-L-alanine amidase CwlH | - |
| A3772_RS13885 (A3772_13885) | yqeD | 2629447..2630073 (+) | 627 | WP_003229962.1 | TVP38/TMEM64 family protein | - |
| A3772_RS13890 (A3772_13890) | gnd | 2630092..2630985 (-) | 894 | WP_003229961.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| A3772_RS13895 (A3772_13895) | yqeB | 2631237..2631959 (+) | 723 | WP_010886572.1 | hypothetical protein | - |
| A3772_RS13900 (A3772_13900) | nucA/comI | 2631992..2632402 (-) | 411 | WP_009967785.1 | sporulation-specific Dnase NucB | Machinery gene |
| A3772_RS13905 (A3772_13905) | - | 2632598..2632948 (+) | 351 | Protein_2674 | sigma-70 family RNA polymerase sigma factor | - |
| A3772_RS13910 (A3772_13910) | spoIVCA | 2632976..2634436 (-) | 1461 | WP_223257626.1 | site-specific DNA recombinase SpoIVCA | - |
| A3772_RS23050 | - | 2634394..2634572 (-) | 179 | Protein_2676 | hypothetical protein | - |
| A3772_RS13915 (A3772_13915) | arsC | 2634927..2635346 (-) | 420 | WP_004398596.1 | thioredoxin-dependent arsenate reductase | - |
| A3772_RS13920 (A3772_13920) | acr3 | 2635358..2636398 (-) | 1041 | WP_004398718.1 | arsenite efflux transporter Acr3 | - |
| A3772_RS13925 (A3772_13925) | arsK | 2636421..2636861 (-) | 441 | WP_003229954.1 | ArsI/CadI family heavy metal resistance metalloenzyme | - |
| A3772_RS13930 (A3772_13930) | arsR | 2636922..2637239 (-) | 318 | WP_004399122.1 | arsenical resistance operon transcriptional regulator ArsR | - |
| A3772_RS13935 (A3772_13935) | yqcI | 2637611..2638375 (-) | 765 | WP_004398670.1 | YqcI/YcgG family protein | - |
| A3772_RS13940 (A3772_13940) | rapE | 2638818..2639945 (+) | 1128 | WP_004398842.1 | response regulator aspartate phosphatase RapE | - |
| A3772_RS13945 (A3772_13945) | phrE | 2639935..2640069 (+) | 135 | WP_004398770.1 | phosphatase RapE inhibitor PhrE | - |
| A3772_RS13950 (A3772_13950) | - | 2640179..2640337 (+) | 159 | WP_003245945.1 | hypothetical protein | - |
| A3772_RS23215 | - | 2640301..2640591 (+) | 291 | WP_418910793.1 | hypothetical protein | - |
| A3772_RS13955 (A3772_13955) | yqcG | 2640707..2642302 (+) | 1596 | WP_062826635.1 | LXG family T7SS effector endonuclease toxin YqcG | - |
| A3772_RS13960 (A3772_13960) | yqcF | 2642317..2642895 (+) | 579 | WP_009967790.1 | type VII secretion system immunity protein YqcF | - |
| A3772_RS22750 (A3772_13965) | - | 2643013..2643159 (+) | 147 | WP_009967791.1 | hypothetical protein | - |
| A3772_RS13970 (A3772_13970) | - | 2643156..2643518 (-) | 363 | WP_003229947.1 | hypothetical protein | - |
| A3772_RS13975 (A3772_13975) | - | 2643534..2644013 (-) | 480 | WP_004399085.1 | hypothetical protein | - |
| A3772_RS13980 (A3772_13980) | cwlA | 2644178..2644996 (-) | 819 | WP_003229946.1 | N-acetylmuramoyl-L-alanine amidase CwlA | - |
| A3772_RS13985 (A3772_13985) | skhD | 2645041..2645463 (-) | 423 | WP_003246208.1 | phage holin family protein | - |
| A3772_RS13990 (A3772_13990) | xepA | 2645508..2646401 (-) | 894 | WP_003246010.1 | phage-like element PBSX protein XepA | - |
| A3772_RS13995 (A3772_13995) | yqcE | 2646489..2646653 (-) | 165 | WP_003229944.1 | XkdX family protein | - |
| A3772_RS14000 (A3772_14000) | yqcD | 2646650..2646985 (-) | 336 | WP_009967793.1 | XkdW family protein | - |
| A3772_RS14005 (A3772_14005) | yqcC | 2646995..2648095 (-) | 1101 | WP_003229943.1 | pyocin knob domain-containing protein | - |
| A3772_RS14010 (A3772_14010) | - | 2648098..2648370 (-) | 273 | WP_003229942.1 | hypothetical protein | - |
| A3772_RS14015 (A3772_14015) | yqcA | 2648367..2648945 (-) | 579 | WP_003229941.1 | YmfQ family protein | - |
| A3772_RS14020 (A3772_14020) | yqbT | 2648929..2649975 (-) | 1047 | WP_003229940.1 | baseplate J/gp47 family protein | - |
| A3772_RS14025 (A3772_14025) | yqbS | 2649968..2650393 (-) | 426 | WP_004398572.1 | DUF2634 domain-containing protein | - |
| A3772_RS14030 (A3772_14030) | yqbR | 2650406..2650669 (-) | 264 | WP_003229938.1 | DUF2577 family protein | - |
| A3772_RS14035 (A3772_14035) | yqbQ | 2650666..2651646 (-) | 981 | WP_004398524.1 | XkdQ/YqbQ family protein | - |
| A3772_RS14040 (A3772_14040) | yqbP | 2651659..2652318 (-) | 660 | WP_004398548.1 | LysM peptidoglycan-binding domain-containing protein | - |
| A3772_RS14045 (A3772_14045) | yqbO | 2652311..2657068 (-) | 4758 | WP_003246092.1 | phage tail tape measure protein | - |
| A3772_RS14050 (A3772_14050) | - | 2657071..2657208 (-) | 138 | WP_003229934.1 | hypothetical protein | - |
| A3772_RS14055 (A3772_14055) | - | 2657250..2657699 (-) | 450 | WP_003229933.1 | phage tail assembly chaperone | - |
| A3772_RS14060 (A3772_14060) | txpA | 2657845..2658024 (+) | 180 | WP_004398662.1 | type I toxin-antitoxin system toxin TxpA | - |
| A3772_RS22755 | bsrH | 2658404..2658493 (+) | 90 | WP_075058862.1 | type I toxin-antitoxin system toxin BsrH | - |
| A3772_RS14065 (A3772_14065) | yqbM | 2658747..2659190 (-) | 444 | WP_003229930.1 | phage tail tube protein | - |
| A3772_RS14070 (A3772_14070) | yqbK | 2659193..2660593 (-) | 1401 | WP_003229929.1 | phage tail sheath family protein | - |
| A3772_RS14075 (A3772_14075) | - | 2660594..2660785 (-) | 192 | WP_010886574.1 | hypothetical protein | - |
| A3772_RS14080 (A3772_14080) | yqbJ | 2660782..2661219 (-) | 438 | WP_003229927.1 | phage tail terminator family protein | - |
| A3772_RS14085 (A3772_14085) | yqbI | 2661232..2661735 (-) | 504 | WP_003246050.1 | HK97 gp10 family phage protein | - |
| A3772_RS14090 (A3772_14090) | yqbH | 2661732..2662094 (-) | 363 | WP_003229925.1 | YqbH/XkdH family protein | - |
| A3772_RS14095 (A3772_14095) | gkpG | 2662091..2662486 (-) | 396 | WP_004398566.1 | DUF3199 family protein | - |
| A3772_RS14100 (A3772_14100) | yqbF | 2662490..2662801 (-) | 312 | WP_003229923.1 | YqbF domain-containing protein | - |
| A3772_RS14105 (A3772_14105) | skdG | 2662812..2663747 (-) | 936 | WP_003229922.1 | phage major capsid protein | - |
| A3772_RS14110 (A3772_14110) | yqbD | 2663766..2664734 (-) | 969 | WP_003229921.1 | XkdF-like putative serine protease domain-containing protein | - |
| A3772_RS14115 (A3772_14115) | - | 2664767..2665420 (-) | 654 | WP_003229920.1 | hypothetical protein | - |
| A3772_RS14120 (A3772_14120) | yqbB | 2665461..2666378 (-) | 918 | WP_004398748.1 | phage head morphogenesis protein | - |
| A3772_RS14125 (A3772_14125) | yqbA | 2666375..2667907 (-) | 1533 | WP_004398894.1 | phage portal protein | - |
| A3772_RS14130 (A3772_14130) | stmB | 2667911..2669206 (-) | 1296 | WP_003229917.1 | PBSX family phage terminase large subunit | - |
| A3772_RS14135 (A3772_14135) | terS | 2669199..2669918 (-) | 720 | WP_003229916.1 | phage terminase small subunit | - |
| A3772_RS14140 (A3772_14140) | - | 2669986..2670450 (-) | 465 | WP_004398685.1 | hypothetical protein | - |
| A3772_RS14145 (A3772_14145) | yqaQ | 2670594..2671049 (-) | 456 | WP_004398775.1 | hypothetical protein | - |
| A3772_RS14150 (A3772_14150) | - | 2671247..2672176 (+) | 930 | WP_003229913.1 | hypothetical protein | - |
| A3772_RS14155 (A3772_14155) | yqaO | 2672250..2672456 (-) | 207 | WP_003229912.1 | XtrA/YqaO family protein | - |
| A3772_RS14160 (A3772_14160) | yqaN | 2672538..2672966 (-) | 429 | WP_009967809.1 | RusA family crossover junction endodeoxyribonuclease | - |
| A3772_RS14170 (A3772_14170) | - | 2673062..2673211 (-) | 150 | WP_003229910.1 | hypothetical protein | - |
| A3772_RS14175 (A3772_14175) | sknM | 2673202..2674143 (-) | 942 | WP_075058863.1 | ATP-binding protein | - |
| A3772_RS14180 (A3772_14180) | yqaL | 2674025..2674702 (-) | 678 | WP_010886575.1 | DnaD domain-containing protein | - |
| A3772_RS14185 (A3772_14185) | recT | 2674778..2675632 (-) | 855 | WP_003229907.1 | recombinase RecT | - |
| A3772_RS14190 (A3772_14190) | yqaJ | 2675635..2676594 (-) | 960 | WP_004398673.1 | YqaJ viral recombinase family protein | - |
| A3772_RS14195 (A3772_14195) | yqaI | 2676700..2676894 (-) | 195 | WP_003229905.1 | YqaI family protein | - |
| A3772_RS22760 | - | 2676854..2677027 (-) | 174 | WP_119123069.1 | hypothetical protein | - |
| A3772_RS14200 (A3772_14200) | sknH | 2677024..2677281 (-) | 258 | WP_003245994.1 | YqaH family protein | - |
| A3772_RS14205 (A3772_14205) | yqaG | 2677278..2677847 (-) | 570 | WP_004398626.1 | helix-turn-helix domain-containing protein | - |
| A3772_RS14210 (A3772_14210) | - | 2677921..2678061 (-) | 141 | WP_003229902.1 | hypothetical protein | - |
| A3772_RS14215 (A3772_14215) | yqaF | 2678091..2678321 (-) | 231 | WP_004398958.1 | helix-turn-helix transcriptional regulator | - |
| A3772_RS14220 (A3772_14220) | sknR | 2678498..2678848 (+) | 351 | WP_004398704.1 | transcriptional regulator SknR | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14967.97 Da Isoelectric Point: 5.1853
>NTDB_id=176065 A3772_RS13900 WP_009967785.1 2631992..2632402(-) (nucA/comI) [Bacillus subtilis strain SZMC 6179J isolate B23]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
Nucleotide
Download Length: 411 bp
>NTDB_id=176065 A3772_RS13900 WP_009967785.1 2631992..2632402(-) (nucA/comI) [Bacillus subtilis strain SZMC 6179J isolate B23]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
62.609 |
84.559 |
0.529 |