Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   A3772_RS12110 Genome accession   NZ_CP015004
Coordinates   2320417..2321037 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SZMC 6179J isolate B23     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2315417..2326037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3772_RS12070 (A3772_12070) ptsA 2316548..2317054 (-) 507 WP_009967573.1 PTS sugar transporter subunit IIA -
  A3772_RS12075 (A3772_12075) ypqA 2317192..2317611 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  A3772_RS12080 (A3772_12080) sppG 2317632..2318009 (-) 378 WP_004398696.1 YppG family protein -
  A3772_RS12085 (A3772_12085) yppF 2318197..2318385 (+) 189 WP_003230690.1 YppF family protein -
  A3772_RS12090 (A3772_12090) yppE 2318424..2318795 (-) 372 WP_003246080.1 YppE family protein -
  A3772_RS12095 (A3772_12095) yppD 2318841..2319086 (-) 246 WP_004398488.1 YppD family protein -
  A3772_RS12100 (A3772_12100) sspM 2319285..2319389 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  A3772_RS12105 (A3772_12105) yppC 2319414..2320376 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  A3772_RS12110 (A3772_12110) recU 2320417..2321037 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  A3772_RS12115 (A3772_12115) ponA 2321059..2323803 (+) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  A3772_RS12120 (A3772_12120) ypoC 2323879..2324373 (-) 495 WP_009967579.1 YpoC family protein -
  A3772_RS12125 (A3772_12125) nth 2324370..2325029 (-) 660 WP_009967580.1 endonuclease III -
  A3772_RS12130 (A3772_12130) dnaD 2325048..2325746 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=176049 A3772_RS12110 WP_004399067.1 2320417..2321037(+) (recU) [Bacillus subtilis strain SZMC 6179J isolate B23]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=176049 A3772_RS12110 WP_004399067.1 2320417..2321037(+) (recU) [Bacillus subtilis strain SZMC 6179J isolate B23]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment