Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   BTV17_RS01460 Genome accession   NZ_CP018806
Coordinates   283246..283521 (+) Length   91 a.a.
NCBI ID   WP_411814732.1    Uniprot ID   -
Organism   Histophilus somni strain USDA-ARS-USMARC-63370     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 278246..288521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTV17_RS01420 (BTV17_01415) tolB 278844..280148 (+) 1305 WP_075293669.1 Tol-Pal system beta propeller repeat protein TolB -
  BTV17_RS01425 (BTV17_01420) pal 280158..280613 (+) 456 WP_075293668.1 peptidoglycan-associated lipoprotein Pal -
  BTV17_RS01445 (BTV17_01440) comN 281287..281814 (+) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BTV17_RS01450 (BTV17_01445) comO 281863..282540 (+) 678 WP_081376624.1 type II secretion system protein J Machinery gene
  BTV17_RS01455 (BTV17_01450) comP 282543..283223 (+) 681 WP_075293666.1 DUF2572 family protein Machinery gene
  BTV17_RS01460 (BTV17_01455) comQ 283246..283521 (+) 276 WP_411814732.1 DUF5374 domain-containing protein Machinery gene
  BTV17_RS01465 (BTV17_01460) recC 283574..287008 (+) 3435 WP_075293665.1 exodeoxyribonuclease V subunit gamma -
  BTV17_RS01470 (BTV17_01465) ruvA 287087..287701 (+) 615 WP_075293664.1 Holliday junction branch migration protein RuvA Machinery gene

Sequence

Protein


Download         Length: 91 a.a.        Molecular weight: 10862.61 Da        Isoelectric Point: 9.0489

>NTDB_id=175987 BTV17_RS01460 WP_411814732.1 283246..283521(+) (comQ) [Histophilus somni strain USDA-ARS-USMARC-63370]
MITLLVTMMIFSTLFLFVNQWVSYQRKSAVNIYLRYQALQIAENQHQRLFLEPHFHCPHNIEQNGYKFKINCEGKNVRVS
YANQQVNLLLD

Nucleotide


Download         Length: 276 bp        

>NTDB_id=175987 BTV17_RS01460 WP_411814732.1 283246..283521(+) (comQ) [Histophilus somni strain USDA-ARS-USMARC-63370]
TTGATCACGTTATTAGTCACAATGATGATATTTTCTACATTATTTTTATTTGTTAATCAATGGGTTAGTTATCAAAGAAA
AAGTGCGGTAAATATTTATCTACGTTATCAAGCTTTGCAAATCGCTGAAAATCAACATCAACGCTTATTTCTAGAACCGC
ATTTTCATTGTCCGCATAATATCGAGCAAAATGGTTATAAGTTTAAGATCAATTGTGAAGGTAAGAATGTACGAGTTTCT
TATGCAAATCAACAAGTAAATTTATTGCTTGATTAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(48-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

47.059

93.407

0.44