Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PA11803_RS11160 Genome accession   NZ_CP015003
Coordinates   2321168..2321803 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain PA11803     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2316168..2326803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA11803_RS11145 (PA11803_00835) - 2316874..2318118 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  PA11803_RS11150 (PA11803_00836) - 2318206..2318739 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  PA11803_RS11155 (PA11803_00837) comA 2318870..2321095 (+) 2226 WP_003119806.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PA11803_RS11160 (PA11803_00838) exbB 2321168..2321803 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PA11803_RS11165 (PA11803_00839) - 2321800..2322240 (+) 441 WP_019726515.1 ExbD/TolR family protein -
  PA11803_RS11170 (PA11803_00840) lpxK 2322240..2323238 (+) 999 WP_019726514.1 tetraacyldisaccharide 4'-kinase -
  PA11803_RS11175 (PA11803_00841) - 2323276..2323461 (+) 186 WP_003091157.1 Trm112 family protein -
  PA11803_RS11180 (PA11803_00842) kdsB 2323461..2324225 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PA11803_RS11185 (PA11803_00843) - 2324225..2324689 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  PA11803_RS11190 (PA11803_00844) murB 2324686..2325705 (+) 1020 WP_019726513.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=175985 PA11803_RS11160 WP_003091163.1 2321168..2321803(+) (exbB) [Pseudomonas aeruginosa strain PA11803]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=175985 PA11803_RS11160 WP_003091163.1 2321168..2321803(+) (exbB) [Pseudomonas aeruginosa strain PA11803]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment