Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BTV20_RS05385 Genome accession   NZ_CP018805
Coordinates   1129012..1130442 (-) Length   476 a.a.
NCBI ID   WP_075293871.1    Uniprot ID   A0A9Q6YYZ2
Organism   Histophilus somni strain USDA-ARS-USMARC-63369     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1124012..1135442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTV20_RS05350 (BTV20_05340) infC 1124923..1125465 (+) 543 WP_075293873.1 translation initiation factor IF-3 -
  BTV20_RS05355 (BTV20_05345) rpmI 1125564..1125761 (+) 198 WP_011609029.1 50S ribosomal protein L35 -
  BTV20_RS05360 (BTV20_05350) rplT 1125832..1126185 (+) 354 WP_011609028.1 50S ribosomal protein L20 -
  BTV20_RS05365 (BTV20_05355) - 1126358..1126963 (-) 606 WP_075293872.1 DedA family protein -
  BTV20_RS05370 (BTV20_05360) rplY 1127184..1127471 (+) 288 WP_011609026.1 50S ribosomal protein L25 -
  BTV20_RS05375 - 1128032..1128256 (-) 225 WP_087469221.1 hypothetical protein -
  BTV20_RS05380 (BTV20_05365) - 1128482..1128901 (-) 420 WP_012340506.1 hypothetical protein -
  BTV20_RS05385 (BTV20_05370) sbcB 1129012..1130442 (-) 1431 WP_075293871.1 exodeoxyribonuclease I Machinery gene
  BTV20_RS05390 (BTV20_05375) - 1130485..1133541 (-) 3057 WP_075293870.1 type I restriction endonuclease subunit R -
  BTV20_RS05395 (BTV20_05380) - 1133671..1134195 (-) 525 WP_075293869.1 transposase -
  BTV20_RS10495 - 1134263..1134835 (-) 573 Protein_1056 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 55711.37 Da        Isoelectric Point: 5.6753

>NTDB_id=175950 BTV20_RS05385 WP_075293871.1 1129012..1130442(-) (sbcB) [Histophilus somni strain USDA-ARS-USMARC-63369]
MQNDFSFFIYDYESFGINPATDRPAQFAGIRTDQDFNIIGEPVMFYCKQTDDYLPSPESVLVTGITPQICNEKGIPEPEF
AEKVLAEFSQPNTCIMGYNNVRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLIDVVRACYALRPDGINWAYDDDGMPSF
RLEKLTQVNDIEHGNAHDAMADVYATIAMAKLIKQKQPKLFQFFFENRGKREVEKLIDIANMKPLVHVSGMLGNYRGNTS
WVVPLAWHPINQNAVIVCDLAKDIDDLLAKSAVELRQNLYTPKVELEQHNILPVPLKLVHINKCPILAPAKTLLPENATK
LGIDREFCLQNLQKLRQSPDIRDKVIEIFHDEREVIHSDNVETELYKQFFSNNDKNNMTILRQLSPEKLNEHNLSFSDKR
ISDLLFHYRARHFYKTLDRSEQIKWQKYRQRKLEKSAVQFEESLQRLVEEYQNNPEKLLLLQQVYEYGATLLSKLY

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=175950 BTV20_RS05385 WP_075293871.1 1129012..1130442(-) (sbcB) [Histophilus somni strain USDA-ARS-USMARC-63369]
ATGCAAAATGATTTCAGTTTTTTTATCTACGATTACGAAAGTTTTGGGATTAATCCTGCCACTGACAGACCGGCTCAATT
CGCCGGTATTCGTACAGATCAAGATTTTAATATTATTGGCGAGCCTGTAATGTTTTATTGTAAGCAAACCGATGATTATT
TACCGTCGCCGGAATCAGTTTTGGTAACCGGTATTACACCGCAAATTTGTAATGAGAAAGGTATTCCCGAACCGGAATTC
GCAGAGAAAGTTTTAGCTGAATTTAGTCAACCCAACACTTGTATTATGGGGTATAACAATGTCCGTTATGACGATGAGAT
GACACGTTATACCTTTTATCGTAACTTTATTGATCCCTATGAATACAGTTGGAAAAACGGCAATTCTCGCTGGGATTTAA
TAGATGTAGTCCGAGCTTGTTACGCTTTACGTCCGGATGGAATAAATTGGGCTTACGATGATGATGGAATGCCGAGTTTT
CGTTTGGAAAAATTAACACAAGTAAATGATATAGAGCATGGTAATGCTCACGATGCAATGGCTGACGTCTATGCCACGAT
TGCAATGGCAAAATTGATTAAACAAAAACAACCAAAACTTTTTCAATTTTTCTTTGAAAATAGAGGAAAGAGGGAAGTTG
AGAAGTTGATTGATATCGCTAATATGAAACCTTTAGTACATGTATCAGGCATGTTGGGTAATTATCGAGGTAATACCAGC
TGGGTTGTGCCATTAGCTTGGCATCCTATAAATCAGAATGCTGTTATTGTTTGTGATTTAGCAAAGGATATTGATGACTT
ATTGGCTAAAAGTGCGGTCGAATTACGTCAAAATTTGTATACACCAAAAGTTGAATTGGAACAACATAATATTTTACCTG
TACCACTTAAATTAGTGCATATTAATAAATGTCCTATTCTTGCTCCTGCAAAAACATTATTGCCGGAAAATGCAACCAAA
TTGGGAATTGATCGAGAATTCTGTTTGCAAAATTTGCAAAAACTGCGTCAATCTCCAGATATTCGAGATAAGGTCATTGA
AATTTTCCATGATGAAAGAGAAGTAATACACAGTGATAATGTAGAAACTGAATTATATAAGCAATTTTTCAGTAATAATG
ATAAAAACAATATGACGATTTTGCGTCAATTATCTCCGGAGAAATTAAACGAGCATAATTTATCTTTTTCAGATAAACGT
ATCTCGGATTTATTATTTCATTATCGAGCAAGACATTTCTATAAAACGCTTGATCGCTCTGAACAGATAAAATGGCAAAA
ATATCGCCAACGTAAACTAGAAAAAAGTGCGGTTCAATTTGAGGAAAGTTTACAACGTCTAGTAGAAGAGTATCAAAATA
ATCCTGAAAAATTATTGTTGTTACAACAAGTATATGAATATGGAGCAACTTTACTTAGTAAGCTATATTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(208-469)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q6YYZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

55.844

97.059

0.542

Multiple sequence alignment