NTDB

Overview

Name	radC	Type	Machinery gene
Locus tag	BTV20_RS00790	Genome accession	NZ_CP018805
Coordinates	143833..144501 (+)	Length	222 a.a.
NCBI ID	WP_011608296.1	Uniprot ID	B0UUW7
Organism	Histophilus somni strain USDA-ARS-USMARC-63369
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 138833..149501

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BTV20_RS00760 (BTV20_00760)	recF	139274..140350 (+)	1077	WP_075293535.1	DNA replication/repair protein RecF	-
BTV20_RS00765 (BTV20_00765)	crp	140407..141051 (-)	645	WP_011608291.1	cAMP-activated global transcriptional regulator CRP	Regulator
BTV20_RS00770 (BTV20_00770)	-	141064..141288 (-)	225	WP_012341336.1	YheU family protein	-
BTV20_RS00775 (BTV20_00775)	slmA	141323..141982 (-)	660	WP_011608293.1	nucleoid occlusion factor SlmA	-
BTV20_RS00780 (BTV20_00780)	dut	141982..142437 (-)	456	WP_011608294.1	dUTP diphosphatase	-
BTV20_RS00785 (BTV20_00785)	coaBC	142434..143660 (-)	1227	WP_075293534.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
BTV20_RS00790 (BTV20_00790)	radC	143833..144501 (+)	669	WP_011608296.1	RadC family protein	Machinery gene
BTV20_RS00795 (BTV20_00795)	rpmB	144722..144958 (+)	237	WP_011608297.1	50S ribosomal protein L28	-
BTV20_RS00800 (BTV20_00800)	rpmG	144970..145140 (+)	171	WP_005542835.1	50S ribosomal protein L33	-
BTV20_RS00805 (BTV20_00805)	mutM	145246..146058 (+)	813	WP_075293533.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
BTV20_RS00810 (BTV20_00810)	ilvG	146150..147826 (+)	1677	WP_012340456.1	acetolactate synthase 2 catalytic subunit	-
BTV20_RS00815 (BTV20_00815)	ilvM	147830..148048 (+)	219	WP_011608300.1	acetolactate synthase 2 small subunit	-
BTV20_RS00820 (BTV20_00820)	-	148114..148776 (+)	663	WP_075293532.1	MOSC domain-containing protein	-
BTV20_RS00825 (BTV20_00825)	-	148893..149396 (+)	504	WP_011608302.1	chorismate--pyruvate lyase family protein	-

Sequence

Protein

Download Length: 222 a.a. Molecular weight: 25553.76 Da Isoelectric Point: 7.3730

                                >NTDB_id=175923 BTV20_RS00790 WP_011608296.1 143833..144501(+) (radC) [Histophilus somni strain USDA-ARS-USMARC-63369]

MTQQNTTLMPREKLLKYGASSLDDKELLAIFLRTGIKNCPVMQLSELVLAHFSSLRGLINADQKHFCQMKGLGITQFVQL

QACTEMTKRYLLQELQFAQEFTSPDTVRMYLQTELENKDREIFMVLFLDNQHRLIKKEEMFLGTINQANVYPREIIKTAL

FCNAAALILAHNHPSGVSTPSMADRKMTENIKQLSELMEIRVLDHFIIGKGNYFSFAEQGWI

Nucleotide

Download Length: 669 bp

                                >NTDB_id=175923 BTV20_RS00790 WP_011608296.1 143833..144501(+) (radC) [Histophilus somni strain USDA-ARS-USMARC-63369]

ATGACACAACAAAATACAACTTTAATGCCGAGAGAAAAACTACTGAAATATGGAGCTTCATCACTTGATGATAAGGAATT

ATTAGCGATTTTCTTACGTACAGGTATAAAAAATTGTCCTGTTATGCAACTCTCCGAGTTGGTACTTGCTCATTTTTCTT

CTTTAAGAGGATTAATTAATGCAGATCAAAAGCATTTTTGCCAAATGAAAGGATTGGGTATTACTCAATTTGTACAATTA

CAAGCCTGTACTGAAATGACCAAACGTTATCTCTTACAAGAATTACAGTTTGCACAAGAATTTACCAGCCCTGATACGGT

TCGTATGTATTTACAGACTGAATTAGAAAATAAAGATAGAGAAATTTTTATGGTACTGTTTTTGGATAATCAACATCGTT

TAATAAAAAAAGAGGAAATGTTTTTAGGTACCATTAACCAGGCAAATGTTTATCCTCGTGAGATTATTAAAACCGCACTA

TTTTGTAATGCAGCCGCACTTATTCTTGCACATAATCATCCTTCCGGTGTTTCAACGCCAAGCATGGCAGACAGAAAAAT

GACCGAGAATATAAAACAACTATCAGAATTAATGGAAATCCGTGTTTTAGATCATTTTATCATTGGTAAAGGTAACTATT

TCTCCTTTGCAGAACAAGGCTGGATCTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(101-220)

UPF0758 N-terminal (UPF0758_N)

(8-75)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	B0UUW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radC	Haemophilus influenzae Rd KW20	64.815	97.297	0.631

Detailed information NTG0175923