Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BTV20_RS00060 Genome accession   NZ_CP018805
Coordinates   10352..11002 (-) Length   216 a.a.
NCBI ID   WP_012340956.1    Uniprot ID   A0A9Q6YZQ0
Organism   Histophilus somni strain USDA-ARS-USMARC-63369     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 5352..16002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTV20_RS00035 (BTV20_00035) cyaY 6209..6517 (-) 309 WP_075294272.1 iron donor protein CyaY -
  BTV20_RS00040 (BTV20_00040) lptM 6642..6773 (+) 132 WP_075294271.1 LPS translocon maturation chaperone LptM -
  BTV20_RS00045 (BTV20_00045) lysA 6795..8048 (+) 1254 WP_075294270.1 diaminopimelate decarboxylase -
  BTV20_RS00050 (BTV20_00050) - 8312..9820 (+) 1509 WP_011609857.1 sodium-dependent transporter -
  BTV20_RS00055 (BTV20_00055) - 9823..9912 (+) 90 WP_075294269.1 methionine/alanine import family NSS transporter small subunit -
  BTV20_RS00060 (BTV20_00060) sxy/tfoX 10352..11002 (-) 651 WP_012340956.1 TfoX/Sxy family DNA transformation protein Regulator

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24719.36 Da        Isoelectric Point: 10.5049

>NTDB_id=175919 BTV20_RS00060 WP_012340956.1 10352..11002(-) (sxy/tfoX) [Histophilus somni strain USDA-ARS-USMARC-63369]
MTKSLKDTENIRSELTELIGTITVKNLFSGYGLFKKGLMFGLYQQGKFYIRAEKELAKYLESLGALSYLALTPNPQLNIG
NYYLLPKEITQNKEHFRQILYLSIAQTRAKKIAQELARKKRIKDLPNLSIKHERLLSKIHIKDIKSFKLKGAANCYIELK
LSGIPVNLILFWNLTAALLYKNVNVLTKTEKEQALKKLNKGLERAGLKPVEIILLQ

Nucleotide


Download         Length: 651 bp        

>NTDB_id=175919 BTV20_RS00060 WP_012340956.1 10352..11002(-) (sxy/tfoX) [Histophilus somni strain USDA-ARS-USMARC-63369]
ATGACCAAATCATTAAAAGACACTGAAAATATTAGAAGTGAACTTACCGAATTGATAGGAACTATAACTGTGAAAAATCT
TTTTTCTGGTTATGGTTTATTTAAGAAAGGTCTTATGTTTGGTTTATACCAGCAAGGAAAATTTTATATTCGAGCAGAGA
AGGAATTAGCTAAATACCTAGAAAGCCTAGGTGCTTTATCATATTTAGCTTTAACCCCAAACCCTCAACTAAATATAGGA
AATTATTATCTATTGCCAAAAGAAATTACACAGAATAAGGAACATTTTCGTCAAATTCTCTATCTATCTATTGCTCAAAC
TAGAGCAAAGAAAATTGCACAAGAACTTGCTCGGAAAAAAAGAATAAAAGATCTCCCAAATCTTTCGATAAAACACGAAA
GGCTTCTTTCTAAAATACACATTAAAGATATAAAATCCTTTAAATTAAAAGGAGCAGCAAATTGCTACATAGAGTTAAAA
CTCTCAGGTATTCCTGTAAATCTCATTTTATTTTGGAATCTTACTGCCGCACTTTTATACAAGAATGTCAATGTATTGAC
TAAAACAGAAAAAGAACAGGCTTTAAAGAAACTTAATAAAGGTCTAGAGAGAGCAGGATTAAAACCTGTTGAGATTATAC
TTTTACAATAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(17-106)

TfoX C-terminal domain (TfoX_C)

(119-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q6YZQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

39.801

93.056

0.37