Detailed information NTG0175809

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: BTV19_RS00785
• Genome accession: NZ_CP018803
• Coordinates: 143176..143844 (+)
• Length: 222 a.a.
• NCBI ID: WP_011608296.1
• Uniprot ID: B0UUW7
• Organism: Histophilus somni strain USDA-ARS-USMARC-63255
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 138176..148844

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BTV19_RS00755 (BTV19_00755)	recF	138617..139693 (+)	1077	WP_075293535.1	DNA replication/repair protein RecF	-
BTV19_RS00760 (BTV19_00760)	crp	139750..140394 (-)	645	WP_011608291.1	cAMP-activated global transcriptional regulator CRP	Regulator
BTV19_RS00765 (BTV19_00765)	-	140407..140631 (-)	225	WP_012341336.1	YheU family protein	-
BTV19_RS00770 (BTV19_00770)	slmA	140666..141325 (-)	660	WP_011608293.1	nucleoid occlusion factor SlmA	-
BTV19_RS00775 (BTV19_00775)	dut	141325..141780 (-)	456	WP_011608294.1	dUTP diphosphatase	-
BTV19_RS00780 (BTV19_00780)	coaBC	141777..143003 (-)	1227	WP_075293534.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
BTV19_RS00785 (BTV19_00785)	radC	143176..143844 (+)	669	WP_011608296.1	RadC family protein	Machinery gene
BTV19_RS00790 (BTV19_00790)	rpmB	144065..144301 (+)	237	WP_011608297.1	50S ribosomal protein L28	-
BTV19_RS00795 (BTV19_00795)	rpmG	144313..144483 (+)	171	WP_005542835.1	50S ribosomal protein L33	-
BTV19_RS00800 (BTV19_00800)	mutM	144589..145401 (+)	813	WP_075293533.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
BTV19_RS00805 (BTV19_00805)	ilvG	145493..147169 (+)	1677	WP_012340456.1	acetolactate synthase 2 catalytic subunit	-
BTV19_RS00810 (BTV19_00810)	ilvM	147173..147391 (+)	219	WP_011608300.1	acetolactate synthase 2 small subunit	-
BTV19_RS00815 (BTV19_00815)	-	147457..148119 (+)	663	WP_075293532.1	MOSC domain-containing protein	-
BTV19_RS00820 (BTV19_00820)	-	148236..148739 (+)	504	WP_011608302.1	chorismate--pyruvate lyase family protein	-

Sequence

Protein

• Length: 222 a.a.
• Molecular weight: 25553.76 Da
• Isoelectric Point: 7.3730

>NTDB_id=175809 BTV19_RS00785 WP_011608296.1 143176..143844(+) (radC) [Histophilus somni strain USDA-ARS-USMARC-63255]
MTQQNTTLMPREKLLKYGASSLDDKELLAIFLRTGIKNCPVMQLSELVLAHFSSLRGLINADQKHFCQMKGLGITQFVQL
QACTEMTKRYLLQELQFAQEFTSPDTVRMYLQTELENKDREIFMVLFLDNQHRLIKKEEMFLGTINQANVYPREIIKTAL
FCNAAALILAHNHPSGVSTPSMADRKMTENIKQLSELMEIRVLDHFIIGKGNYFSFAEQGWI

Nucleotide

• Length: 669 bp

>NTDB_id=175809 BTV19_RS00785 WP_011608296.1 143176..143844(+) (radC) [Histophilus somni strain USDA-ARS-USMARC-63255]
ATGACACAACAAAATACAACTTTAATGCCGAGAGAAAAACTACTGAAATATGGAGCTTCATCACTTGATGATAAGGAATT
ATTAGCGATTTTCTTACGTACAGGTATAAAAAATTGTCCTGTTATGCAACTCTCCGAGTTGGTACTTGCTCATTTTTCTT
CTTTAAGAGGATTAATTAATGCAGATCAAAAGCATTTTTGCCAAATGAAAGGATTGGGTATTACTCAATTTGTACAATTA
CAAGCCTGTACTGAAATGACCAAACGTTATCTCTTACAAGAATTACAGTTTGCACAAGAATTTACCAGCCCTGATACGGT
TCGTATGTATTTACAGACTGAATTAGAAAATAAAGATAGAGAAATTTTTATGGTACTGTTTTTGGATAATCAACATCGTT
TAATAAAAAAAGAGGAAATGTTTTTAGGTACCATTAACCAGGCAAATGTTTATCCTCGTGAGATTATTAAAACCGCACTA
TTTTGTAATGCAGCCGCACTTATTCTTGCACATAATCATCCTTCCGGTGTTTCAACGCCAAGCATGGCAGACAGAAAAAT
GACCGAGAATATAAAACAACTATCAGAATTAATGGAAATCCGTGTTTTAGATCATTTTATCATTGGTAAAGGTAACTATT
TCTCCTTTGCAGAACAAGGCTGGATCTAG

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (101-220)

• UPF0758 N-terminal (UPF0758_N) (8-75)

3D structure

• AlphaFold DB: B0UUW7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	64.815	97.297	0.631