Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   A2I97_RS07130 Genome accession   NZ_CP014990
Coordinates   1359088..1359372 (+) Length   94 a.a.
NCBI ID   WP_070081755.1    Uniprot ID   -
Organism   Bacillus velezensis strain KD1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1354088..1364372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2I97_RS07105 (A2I97_06885) - 1355335..1356243 (+) 909 WP_070081753.1 ketopantoate reductase family protein -
  A2I97_RS07110 (A2I97_06890) - 1356273..1357505 (-) 1233 WP_070081754.1 aminopeptidase -
  A2I97_RS07115 (A2I97_19195) - 1357606..1357740 (-) 135 WP_003154559.1 protein YkpC -
  A2I97_RS07120 (A2I97_06895) mreBH 1357812..1358819 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  A2I97_RS07130 (A2I97_06905) abrB 1359088..1359372 (+) 285 WP_070081755.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  A2I97_RS07135 (A2I97_06910) - 1359545..1360849 (+) 1305 WP_014304932.1 ATP-binding protein -
  A2I97_RS07140 (A2I97_06915) - 1360851..1361678 (+) 828 WP_109955182.1 gamma-glutamylcyclotransferase -
  A2I97_RS07145 (A2I97_06920) ktrC 1361719..1362384 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  A2I97_RS07150 (A2I97_06925) ade 1362533..1364266 (+) 1734 WP_070081756.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10573.47 Da        Isoelectric Point: 6.9830

>NTDB_id=175767 A2I97_RS07130 WP_070081755.1 1359088..1359372(+) (abrB) [Bacillus velezensis strain KD1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIKEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=175767 A2I97_RS07130 WP_070081755.1 1359088..1359372(+) (abrB) [Bacillus velezensis strain KD1]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCATGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCAAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment