Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   BTV18_RS01460 Genome accession   NZ_CP018802
Coordinates   282937..283614 (+) Length   225 a.a.
NCBI ID   WP_081376624.1    Uniprot ID   -
Organism   Histophilus somni strain USDA-ARS-USMARC-63250     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 277937..288614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTV18_RS01420 (BTV18_01410) tolR 278394..278816 (+) 423 WP_011608414.1 colicin uptake protein TolR -
  BTV18_RS01425 (BTV18_01415) tolA 278835..279890 (+) 1056 WP_075293670.1 cell envelope integrity protein TolA -
  BTV18_RS01430 (BTV18_01420) tolB 279918..281222 (+) 1305 WP_075293669.1 Tol-Pal system beta propeller repeat protein TolB -
  BTV18_RS01435 (BTV18_01425) pal 281232..281687 (+) 456 WP_075293668.1 peptidoglycan-associated lipoprotein Pal -
  BTV18_RS01455 (BTV18_01445) comN 282361..282888 (+) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BTV18_RS01460 (BTV18_01450) comO 282937..283614 (+) 678 WP_081376624.1 type II secretion system protein J Machinery gene
  BTV18_RS01465 (BTV18_01455) comP 283617..284297 (+) 681 WP_075293666.1 DUF2572 family protein Machinery gene
  BTV18_RS01470 (BTV18_01460) comQ 284320..284595 (+) 276 WP_411814732.1 DUF5374 domain-containing protein Machinery gene
  BTV18_RS01475 (BTV18_01465) recC 284648..288082 (+) 3435 WP_075293665.1 exodeoxyribonuclease V subunit gamma -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25852.55 Da        Isoelectric Point: 8.6710

>NTDB_id=175758 BTV18_RS01460 WP_081376624.1 282937..283614(+) (comO) [Histophilus somni strain USDA-ARS-USMARC-63250]
MIALSLSMMLLMSVSAFYSYSQQQNKQILLHLYLQSELQRTIQLLGKDIRRSGFRAISDKLVRSNFDLFEQDKSGKSIVV
AQADNEPSNSCVLFIYDLDATGCVGTTYRNNVCVRNKQNTAREIERELFGYRLNKQMIETRLTYKNSISANCNQKQCQSY
LQQPACNSGGWVDLLDENDIAITALKFHWIADYNGLEVYLKGHLKRNKQVEYETSAIIPLLNQKR

Nucleotide


Download         Length: 678 bp        

>NTDB_id=175758 BTV18_RS01460 WP_081376624.1 282937..283614(+) (comO) [Histophilus somni strain USDA-ARS-USMARC-63250]
ATGATAGCGTTGAGCTTATCAATGATGTTATTAATGAGTGTTAGTGCATTTTATAGTTATAGTCAGCAACAAAATAAACA
GATACTTTTGCATCTCTATTTACAATCAGAATTGCAACGAACTATCCAACTTTTGGGTAAGGATATTCGCCGTAGTGGAT
TTAGGGCTATTAGTGATAAATTGGTTCGGAGTAATTTCGATTTATTTGAACAAGATAAAAGCGGAAAGAGTATTGTAGTC
GCTCAAGCTGATAATGAACCTTCGAATAGTTGCGTTCTTTTTATTTATGATCTTGATGCTACCGGCTGTGTAGGTACGAC
ATATCGTAATAATGTTTGTGTAAGGAATAAACAAAATACAGCTCGTGAAATTGAGCGAGAGTTATTTGGTTATCGCTTAA
ATAAACAAATGATAGAGACAAGATTAACTTATAAAAATTCAATTAGCGCGAATTGTAATCAAAAACAATGCCAAAGCTAT
TTACAACAACCTGCATGTAATAGCGGAGGGTGGGTCGATTTATTAGATGAAAATGACATAGCCATAACTGCATTAAAATT
TCATTGGATTGCTGATTACAATGGATTGGAAGTTTATCTAAAAGGGCATCTAAAGCGAAATAAACAAGTCGAATATGAGA
CTTCAGCCATTATTCCTTTGCTTAATCAAAAGAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

50.239

92.889

0.467

Multiple sequence alignment