Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   A2I97_RS01790 Genome accession   NZ_CP014990
Coordinates   325365..325802 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain KD1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 320365..330802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2I97_RS19805 (A2I97_18965) - 320963..321091 (-) 129 Protein_301 hypothetical protein -
  A2I97_RS01760 (A2I97_01720) - 321235..322437 (+) 1203 WP_070081342.1 GTP-binding protein -
  A2I97_RS01765 (A2I97_01725) - 322502..323638 (+) 1137 WP_052827030.1 zinc-dependent alcohol dehydrogenase -
  A2I97_RS01770 (A2I97_01730) - 323653..324087 (+) 435 WP_021494203.1 RDD family protein -
  A2I97_RS01775 (A2I97_01735) - 324205..324480 (+) 276 WP_369719109.1 YckD family protein -
  A2I97_RS01780 (A2I97_18970) - 324694..324925 (+) 232 Protein_306 family 1 glycosylhydrolase -
  A2I97_RS01785 (A2I97_01740) nin/comJ 324944..325342 (-) 399 WP_043866822.1 competence protein ComJ Regulator
  A2I97_RS01790 (A2I97_01745) nucA/comI 325365..325802 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  A2I97_RS01795 (A2I97_01750) hxlB 326161..326718 (-) 558 WP_070081343.1 6-phospho-3-hexuloisomerase -
  A2I97_RS01800 (A2I97_01755) hxlA 326715..327350 (-) 636 WP_070081344.1 3-hexulose-6-phosphate synthase -
  A2I97_RS01805 (A2I97_01760) - 327582..327944 (+) 363 WP_016936795.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=175744 A2I97_RS01790 WP_003156588.1 325365..325802(-) (nucA/comI) [Bacillus velezensis strain KD1]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=175744 A2I97_RS01790 WP_003156588.1 325365..325802(-) (nucA/comI) [Bacillus velezensis strain KD1]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTCACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment