Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   A2I97_RS00255 Genome accession   NZ_CP014990
Coordinates   46468..46758 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain KD1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 41468..51758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2I97_RS00215 (A2I97_00210) darA 41485..41814 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  A2I97_RS00220 (A2I97_00215) - 41827..42267 (+) 441 WP_004264730.1 YaaR family protein -
  A2I97_RS00225 (A2I97_00220) holB 42279..43268 (+) 990 WP_070081258.1 DNA polymerase III subunit delta' -
  A2I97_RS00230 (A2I97_00225) ricT 43271..44098 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  A2I97_RS00235 (A2I97_00230) yabA 44113..44472 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  A2I97_RS00240 (A2I97_00235) - 44533..45276 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  A2I97_RS00245 (A2I97_00240) - 45263..45562 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  A2I97_RS00250 (A2I97_00245) rsmI 45537..46418 (+) 882 WP_070081259.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  A2I97_RS00255 (A2I97_00250) abrB 46468..46758 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  A2I97_RS00260 (A2I97_00255) metG 47241..49232 (+) 1992 WP_053573816.1 methionine--tRNA ligase -
  A2I97_RS00265 (A2I97_00260) - 49308..50075 (+) 768 WP_025854081.1 TatD family hydrolase -
  A2I97_RS00270 (A2I97_00265) - 50210..51535 (+) 1326 WP_095324173.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=175739 A2I97_RS00255 WP_169510469.1 46468..46758(-) (abrB) [Bacillus velezensis strain KD1]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=175739 A2I97_RS00255 WP_169510469.1 46468..46758(-) (abrB) [Bacillus velezensis strain KD1]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGTAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment