Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BTD92_RS05845 Genome accession   NZ_CP018801
Coordinates   1109400..1109882 (-) Length   160 a.a.
NCBI ID   WP_001407480.1    Uniprot ID   P52140
Organism   Escherichia coli strain tolC-     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1104400..1114882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTD92_RS05830 (BTD92_01092) ypjF 1108486..1108815 (-) 330 WP_001094400.1 type IV toxin-antitoxin system toxin YpjF -
  BTD92_RS05835 (BTD92_01093) yfjZ 1108836..1109153 (-) 318 WP_000072690.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BTD92_RS05840 (BTD92_01094) ypjJ 1109191..1109391 (-) 201 WP_001395452.1 DUF987 domain-containing protein -
  BTD92_RS05845 (BTD92_01095) radC 1109400..1109882 (-) 483 WP_001407480.1 RadC family protein Machinery gene
  BTD92_RS05850 (BTD92_01096) yfjX 1109891..1110349 (-) 459 WP_000211841.1 antirestriction protein -
  BTD92_RS05855 - 1110452..1110636 (-) 185 Protein_1051 DUF905 family protein -
  BTD92_RS05860 (BTD92_01097) yfjW 1111247..1112950 (-) 1704 WP_000896263.1 protein YfjW -
  BTD92_RS05865 - 1113092..1114101 (+) 1010 Protein_1053 arsenic transporter -
  BTD92_RS26885 - 1114114..1114266 (+) 153 Protein_1054 glutaredoxin domain-containing protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17963.75 Da        Isoelectric Point: 8.6079

>NTDB_id=175689 BTD92_RS05845 WP_001407480.1 1109400..1109882(-) (radC) [Escherichia coli strain tolC-]
MMEQSLIPQTPVLPLTAQRTVKRALTLLDRHLRETGVAFTSTQAARDWLKLKMAGLEREEFMMLYLNQQNQLIAHETLFA
GSISSTEVHPREVVKRALYFNAAAVILAHNHPSGDTTPSQADKTITQRLVQALQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 483 bp        

>NTDB_id=175689 BTD92_RS05845 WP_001407480.1 1109400..1109882(-) (radC) [Escherichia coli strain tolC-]
ATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCT
GCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGG
CGGGGCTGGAGCGTGAAGAATTTATGATGCTGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCC
GGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGATACT
GGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTC
AGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTT
TGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(40-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P52140

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65

0.375

Multiple sequence alignment