Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AYR58_RS05970 Genome accession   NZ_CP014936
Coordinates   1218733..1220103 (+) Length   456 a.a.
NCBI ID   WP_014214882.1    Uniprot ID   -
Organism   Pediococcus claussenii strain TMW 2.54     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1213733..1225103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYR58_RS05940 (AYR58_05935) - 1213849..1214526 (+) 678 WP_014214876.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  AYR58_RS05945 (AYR58_05940) - 1214708..1215064 (+) 357 WP_014214877.1 YisL family protein -
  AYR58_RS05950 (AYR58_05945) - 1215530..1216918 (-) 1389 WP_014214878.1 aminopeptidase C -
  AYR58_RS05955 (AYR58_05950) rpiA 1216958..1217644 (-) 687 WP_014214879.1 ribose-5-phosphate isomerase RpiA -
  AYR58_RS05960 (AYR58_05955) - 1217644..1217967 (-) 324 WP_014214880.1 GNAT family N-acetyltransferase -
  AYR58_RS05965 (AYR58_05960) - 1218111..1218647 (+) 537 WP_014214881.1 dUTP diphosphatase -
  AYR58_RS05970 (AYR58_05965) radA 1218733..1220103 (+) 1371 WP_014214882.1 DNA repair protein RadA Machinery gene
  AYR58_RS05975 (AYR58_05970) - 1220119..1221231 (+) 1113 WP_014214883.1 PIN/TRAM domain-containing protein -
  AYR58_RS05980 (AYR58_05975) gltX 1221303..1222796 (+) 1494 WP_014214884.1 glutamate--tRNA ligase -
  AYR58_RS05985 (AYR58_05980) - 1222989..1223501 (-) 513 WP_014214885.1 DUF308 domain-containing protein -
  AYR58_RS05990 (AYR58_05985) - 1223519..1223974 (-) 456 WP_014214886.1 Fur family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50344.80 Da        Isoelectric Point: 7.7582

>NTDB_id=175203 AYR58_RS05970 WP_014214882.1 1218733..1220103(+) (radA) [Pediococcus claussenii strain TMW 2.54]
MAKTKTQFMCQECGYVSPRYLGKCPNCGRWNTFVEERISEPKEERKSRVSFEGKKSKPQLIKQVSMAEEPRVKTAMEEFN
RVLGGGVVAGSLVLIGGDPGIGKSTLLLQMSGQLAATGRDVLYVSGEESATQIKMRADRLKVQSENFYLYPETDMKNIRD
SIEKLHPGFVVIDSVQTMQEPDIESAVGSVSQIREITAELLQISKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMREEGLREVSNPSEIFLEERLTDANGSAIVVSMEGTRPILVEIQALITPTIYG
NAQRTASGLDRNRVSLIMAVLEKRANLTLQNQDAYLKAAGGVKLDEPAIDLAIAISIVSSFRNQGTEATDSFIGEIGLTG
EIRRVNRIEQRVNEAKKLGFKRIFIPKNNLQGWSAPKGIEVVGVATITEAIHKAFN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=175203 AYR58_RS05970 WP_014214882.1 1218733..1220103(+) (radA) [Pediococcus claussenii strain TMW 2.54]
TTGGCAAAGACAAAAACGCAGTTTATGTGTCAAGAATGTGGATACGTATCGCCACGATACTTGGGTAAATGCCCTAATTG
TGGACGTTGGAATACTTTTGTGGAAGAACGAATTTCAGAGCCTAAAGAAGAACGCAAAAGTCGAGTCAGCTTTGAGGGTA
AGAAAAGTAAACCACAATTAATCAAACAAGTTAGCATGGCTGAAGAACCCCGAGTTAAAACTGCAATGGAAGAATTTAAT
CGAGTACTTGGTGGTGGAGTGGTTGCTGGTTCGTTGGTTTTGATTGGTGGCGATCCTGGAATTGGTAAGTCAACTTTATT
ACTGCAAATGTCGGGGCAACTAGCAGCAACTGGACGAGATGTGTTATATGTTTCTGGTGAAGAAAGTGCCACGCAGATTA
AGATGCGAGCAGATCGACTAAAAGTGCAGAGCGAAAACTTTTATTTATATCCAGAAACAGACATGAAAAATATTCGTGAT
TCAATTGAAAAGCTACATCCTGGATTTGTTGTGATTGATTCGGTTCAAACGATGCAAGAACCAGATATTGAATCTGCAGT
TGGTAGTGTGTCACAGATTCGTGAAATTACGGCAGAGCTTCTTCAAATTTCTAAAACCAATAATATAACAATCTTTATTG
TTGGACATGTAACGAAGGGCGGAGCAATTGCGGGTCCCAAGATTTTGGAACATATGGTTGACACCGTTTTATACTTTGAA
GGTGATTTACACCACACATATCGAATTTTACGTGCGGTTAAGAATCGTTTTGGATCAACCAATGAGCTCGGTATTTTTGA
GATGCGAGAGGAAGGCCTACGGGAGGTATCTAATCCGTCCGAAATTTTTCTGGAAGAGCGTCTAACTGATGCGAATGGCT
CTGCAATTGTTGTTTCAATGGAGGGAACGCGTCCAATTCTGGTTGAAATTCAGGCCTTGATTACGCCAACTATCTATGGA
AATGCCCAAAGAACTGCAAGTGGATTAGATCGAAACCGTGTATCTTTAATTATGGCAGTTTTAGAGAAGAGGGCTAACCT
CACATTACAAAATCAAGATGCCTATTTAAAAGCGGCAGGTGGAGTGAAACTAGATGAACCAGCAATTGATCTAGCAATTG
CGATTAGTATTGTGTCTAGCTTTAGAAACCAAGGAACAGAAGCAACGGATAGTTTTATTGGCGAGATCGGTTTGACTGGT
GAGATTAGACGTGTGAACCGGATCGAGCAACGTGTTAACGAAGCTAAAAAGTTGGGCTTTAAGCGAATCTTTATTCCCAA
GAATAATCTACAAGGGTGGTCAGCACCTAAAGGAATTGAGGTAGTTGGAGTTGCAACGATAACTGAAGCAATTCATAAGG
CTTTTAATTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-221)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.228

100

0.662
  radA Streptococcus mitis NCTC 12261

66.154

99.781

0.66
  radA Streptococcus pneumoniae Rx1

66.154

99.781

0.66
  radA Streptococcus pneumoniae D39

66.154

99.781

0.66
  radA Streptococcus pneumoniae R6

66.154

99.781

0.66
  radA Streptococcus pneumoniae TIGR4

66.154

99.781

0.66
  radA Streptococcus mitis SK321

65.934

99.781

0.658

Multiple sequence alignment