Detailed information
Bioinformatically predicted
Overview
| Name | pepF | Type | Regulator |
| Locus tag | AYR62_RS04310 | Genome accession | NZ_CP014915 |
| Coordinates | 987389..989209 (+) | Length | 606 a.a. |
| NCBI ID | WP_156319398.1 | Uniprot ID | - |
| Organism | Secundilactobacillus paracollinoides strain TMW 1.1994 | ||
| Function | degradation of XIP; competence shut-off (predicted from homology) Competence regulation |
||
Genomic Context
Location: 982389..994209
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AYR62_RS04285 (AYR62_04280) | - | 983109..983609 (-) | 501 | WP_054712375.1 | hypothetical protein | - |
| AYR62_RS04290 (AYR62_04285) | - | 983720..984463 (+) | 744 | WP_065911845.1 | MBL fold metallo-hydrolase | - |
| AYR62_RS04295 (AYR62_04290) | spx | 984588..984992 (+) | 405 | WP_056987194.1 | transcriptional regulator Spx | - |
| AYR62_RS04300 (AYR62_04295) | - | 985153..985878 (+) | 726 | WP_065911847.1 | adaptor protein MecA | - |
| AYR62_RS04305 (AYR62_04300) | - | 986248..987315 (+) | 1068 | WP_065911848.1 | competence protein CoiA | - |
| AYR62_RS04310 (AYR62_04305) | pepF | 987389..989209 (+) | 1821 | WP_156319398.1 | oligoendopeptidase F | Regulator |
| AYR62_RS04315 (AYR62_04310) | - | 989827..990465 (-) | 639 | WP_156319346.1 | DsbA family protein | - |
| AYR62_RS04320 (AYR62_04315) | - | 990750..991433 (+) | 684 | WP_054711382.1 | GTP pyrophosphokinase family protein | - |
| AYR62_RS04325 (AYR62_04320) | - | 991430..992233 (+) | 804 | WP_065911850.1 | NAD kinase | - |
| AYR62_RS04330 (AYR62_04325) | - | 992226..993114 (+) | 889 | Protein_826 | RluA family pseudouridine synthase | - |
Sequence
Protein
Download Length: 606 a.a. Molecular weight: 68723.37 Da Isoelectric Point: 4.6102
>NTDB_id=175121 AYR62_RS04310 WP_156319398.1 987389..989209(+) (pepF) [Secundilactobacillus paracollinoides strain TMW 1.1994]
MADVKQLPTRDEVDPKFTWDLTPIYATTADFEGDFNKVQEAIPELEDLRGSLATGADQLLHAIQSILSVIRRAEKVYVYA
SLKHDEDTGNAENQALSGRTQTLFTSLESAIAWFEPELLAIDKATLDNMLAQNSTLGEYKHYLDTITDQRDHVLAPNEEK
LLAQAGDALGTASNTFGVLNDADLEFPVVEDNDGQAVQLSQGVYDQLIQSTKPAVREMAFKQLYAVYHQFRHTLASTLAG
NVKTHNFNAQVRHYADAREAALSGNHIPVSVYDTLVKAVNAHLPLLHRYVALRKRILGLSDLHMYDLYTPITGEPQLTYT
YETARDEALKALDVMGPDYLSHVKTAFDSRWIDVVENQGKRSGGYSSGMYDTAPYILLNWQDNLESLYTLVHEMGHSMHS
YYSSHNQPYQYGDYSIFVAEIASTTNETLLTDYLLKTYDEPQVQAFVLNHYLDGFKGTVFRQTQFAEFEQFIHEEDAAGH
PLTADHLSDYYLKLNQRYYGDAVQSDPEIADEWARIPHFYYNYYVYQYATGFAAANTLADRILSGDTSKRDAYLNYLKSG
SSDYPIEVMKKAGVDMSQETYLDQAFDQFEARLNQFEKLVEREGKR
MADVKQLPTRDEVDPKFTWDLTPIYATTADFEGDFNKVQEAIPELEDLRGSLATGADQLLHAIQSILSVIRRAEKVYVYA
SLKHDEDTGNAENQALSGRTQTLFTSLESAIAWFEPELLAIDKATLDNMLAQNSTLGEYKHYLDTITDQRDHVLAPNEEK
LLAQAGDALGTASNTFGVLNDADLEFPVVEDNDGQAVQLSQGVYDQLIQSTKPAVREMAFKQLYAVYHQFRHTLASTLAG
NVKTHNFNAQVRHYADAREAALSGNHIPVSVYDTLVKAVNAHLPLLHRYVALRKRILGLSDLHMYDLYTPITGEPQLTYT
YETARDEALKALDVMGPDYLSHVKTAFDSRWIDVVENQGKRSGGYSSGMYDTAPYILLNWQDNLESLYTLVHEMGHSMHS
YYSSHNQPYQYGDYSIFVAEIASTTNETLLTDYLLKTYDEPQVQAFVLNHYLDGFKGTVFRQTQFAEFEQFIHEEDAAGH
PLTADHLSDYYLKLNQRYYGDAVQSDPEIADEWARIPHFYYNYYVYQYATGFAAANTLADRILSGDTSKRDAYLNYLKSG
SSDYPIEVMKKAGVDMSQETYLDQAFDQFEARLNQFEKLVEREGKR
Nucleotide
Download Length: 1821 bp
>NTDB_id=175121 AYR62_RS04310 WP_156319398.1 987389..989209(+) (pepF) [Secundilactobacillus paracollinoides strain TMW 1.1994]
TTGGCAGACGTCAAACAATTACCAACTCGTGATGAAGTAGATCCCAAATTCACGTGGGATCTCACACCAATTTATGCAAC
AACAGCCGACTTTGAAGGTGACTTCAACAAGGTCCAGGAGGCGATTCCTGAATTAGAAGACCTTCGTGGCTCTCTAGCGA
CTGGTGCTGATCAGCTGCTGCATGCGATCCAAAGCATTCTTAGCGTGATTCGACGAGCGGAAAAAGTCTATGTTTACGCG
TCTTTAAAGCACGATGAAGACACCGGAAATGCTGAGAATCAAGCGCTAAGCGGCCGAACGCAAACCTTATTTACCAGTCT
TGAAAGTGCCATTGCGTGGTTTGAACCAGAACTGCTGGCCATTGATAAGGCAACACTTGACAACATGCTGGCCCAAAACA
GTACCCTCGGTGAATACAAACACTATCTCGATACGATTACGGATCAGCGAGATCACGTTTTGGCCCCCAACGAAGAAAAA
TTATTGGCCCAAGCTGGAGATGCACTCGGGACGGCAAGTAACACGTTTGGCGTGTTAAATGATGCTGACCTGGAATTCCC
CGTTGTGGAAGATAATGATGGTCAGGCCGTTCAACTGTCTCAGGGTGTGTATGATCAGTTGATTCAATCCACCAAACCAG
CCGTACGTGAAATGGCCTTTAAACAGCTCTATGCCGTTTATCACCAATTCCGCCATACATTGGCTTCAACACTGGCTGGC
AACGTTAAAACGCATAATTTCAACGCTCAGGTGCGTCATTATGCTGATGCCCGTGAGGCAGCGTTGAGTGGCAATCACAT
CCCTGTGAGTGTGTATGACACGCTCGTCAAGGCGGTCAACGCCCATTTACCGTTACTGCACCGTTATGTGGCGCTTCGAA
AACGAATCTTGGGGTTGTCGGACCTTCATATGTATGATCTGTATACGCCAATTACCGGGGAACCACAATTAACCTACACC
TACGAGACTGCTCGTGATGAAGCACTTAAAGCTTTAGATGTGATGGGACCTGACTATCTATCCCACGTTAAAACAGCCTT
TGATTCACGCTGGATCGATGTTGTTGAGAACCAGGGAAAGCGTTCTGGTGGGTATTCATCTGGCATGTACGACACGGCAC
CGTATATTTTGCTGAACTGGCAGGATAATTTGGAAAGTTTGTACACCTTGGTTCATGAAATGGGTCACAGTATGCACAGC
TATTACAGTAGTCACAACCAGCCATATCAGTATGGCGACTATTCCATTTTCGTTGCCGAGATTGCATCCACGACTAATGA
AACGTTGTTGACGGACTATCTGCTGAAGACTTACGACGAGCCACAAGTTCAGGCCTTTGTGTTAAATCATTACCTGGACG
GCTTTAAGGGGACTGTCTTCCGCCAGACTCAGTTTGCTGAATTTGAGCAATTTATTCACGAGGAAGATGCAGCGGGACAC
CCGTTGACGGCGGATCATTTGAGTGATTACTATCTGAAGCTTAATCAGCGTTACTACGGTGATGCTGTTCAGTCTGATCC
GGAGATTGCGGACGAATGGGCCCGAATCCCGCATTTCTACTATAACTACTATGTTTACCAGTACGCCACCGGCTTCGCGG
CAGCGAATACGCTGGCAGACCGGATCCTTTCTGGGGACACTAGCAAGCGCGATGCTTATCTGAATTACCTGAAGTCGGGC
AGTTCTGATTATCCGATCGAAGTGATGAAGAAGGCGGGCGTAGACATGTCACAAGAGACCTATCTCGACCAGGCGTTTGA
CCAGTTTGAAGCACGGTTGAATCAGTTTGAAAAATTGGTAGAGCGTGAAGGAAAACGGTAG
TTGGCAGACGTCAAACAATTACCAACTCGTGATGAAGTAGATCCCAAATTCACGTGGGATCTCACACCAATTTATGCAAC
AACAGCCGACTTTGAAGGTGACTTCAACAAGGTCCAGGAGGCGATTCCTGAATTAGAAGACCTTCGTGGCTCTCTAGCGA
CTGGTGCTGATCAGCTGCTGCATGCGATCCAAAGCATTCTTAGCGTGATTCGACGAGCGGAAAAAGTCTATGTTTACGCG
TCTTTAAAGCACGATGAAGACACCGGAAATGCTGAGAATCAAGCGCTAAGCGGCCGAACGCAAACCTTATTTACCAGTCT
TGAAAGTGCCATTGCGTGGTTTGAACCAGAACTGCTGGCCATTGATAAGGCAACACTTGACAACATGCTGGCCCAAAACA
GTACCCTCGGTGAATACAAACACTATCTCGATACGATTACGGATCAGCGAGATCACGTTTTGGCCCCCAACGAAGAAAAA
TTATTGGCCCAAGCTGGAGATGCACTCGGGACGGCAAGTAACACGTTTGGCGTGTTAAATGATGCTGACCTGGAATTCCC
CGTTGTGGAAGATAATGATGGTCAGGCCGTTCAACTGTCTCAGGGTGTGTATGATCAGTTGATTCAATCCACCAAACCAG
CCGTACGTGAAATGGCCTTTAAACAGCTCTATGCCGTTTATCACCAATTCCGCCATACATTGGCTTCAACACTGGCTGGC
AACGTTAAAACGCATAATTTCAACGCTCAGGTGCGTCATTATGCTGATGCCCGTGAGGCAGCGTTGAGTGGCAATCACAT
CCCTGTGAGTGTGTATGACACGCTCGTCAAGGCGGTCAACGCCCATTTACCGTTACTGCACCGTTATGTGGCGCTTCGAA
AACGAATCTTGGGGTTGTCGGACCTTCATATGTATGATCTGTATACGCCAATTACCGGGGAACCACAATTAACCTACACC
TACGAGACTGCTCGTGATGAAGCACTTAAAGCTTTAGATGTGATGGGACCTGACTATCTATCCCACGTTAAAACAGCCTT
TGATTCACGCTGGATCGATGTTGTTGAGAACCAGGGAAAGCGTTCTGGTGGGTATTCATCTGGCATGTACGACACGGCAC
CGTATATTTTGCTGAACTGGCAGGATAATTTGGAAAGTTTGTACACCTTGGTTCATGAAATGGGTCACAGTATGCACAGC
TATTACAGTAGTCACAACCAGCCATATCAGTATGGCGACTATTCCATTTTCGTTGCCGAGATTGCATCCACGACTAATGA
AACGTTGTTGACGGACTATCTGCTGAAGACTTACGACGAGCCACAAGTTCAGGCCTTTGTGTTAAATCATTACCTGGACG
GCTTTAAGGGGACTGTCTTCCGCCAGACTCAGTTTGCTGAATTTGAGCAATTTATTCACGAGGAAGATGCAGCGGGACAC
CCGTTGACGGCGGATCATTTGAGTGATTACTATCTGAAGCTTAATCAGCGTTACTACGGTGATGCTGTTCAGTCTGATCC
GGAGATTGCGGACGAATGGGCCCGAATCCCGCATTTCTACTATAACTACTATGTTTACCAGTACGCCACCGGCTTCGCGG
CAGCGAATACGCTGGCAGACCGGATCCTTTCTGGGGACACTAGCAAGCGCGATGCTTATCTGAATTACCTGAAGTCGGGC
AGTTCTGATTATCCGATCGAAGTGATGAAGAAGGCGGGCGTAGACATGTCACAAGAGACCTATCTCGACCAGGCGTTTGA
CCAGTTTGAAGCACGGTTGAATCAGTTTGAAAAATTGGTAGAGCGTGAAGGAAAACGGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pepF | Streptococcus salivarius strain HSISS4 |
51.096 |
97.855 |
0.5 |