Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AYR56_RS03065 Genome accession   NZ_CP014899
Coordinates   682574..684382 (-) Length   602 a.a.
NCBI ID   WP_068226155.1    Uniprot ID   A0A192GZQ7
Organism   Loigolactobacillus backii strain TMW 1.2002     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 677574..689382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYR56_RS13715 (AYR56_03050) - 677981..678922 (-) 942 WP_333780985.1 IS3 family transposase -
  AYR56_RS13720 (AYR56_03055) - 678859..679395 (-) 537 WP_068224266.1 helix-turn-helix domain-containing protein -
  AYR56_RS03050 (AYR56_03060) - 679615..680763 (+) 1149 WP_068279687.1 hypothetical protein -
  AYR56_RS03055 (AYR56_03065) - 680768..681091 (-) 324 WP_068226152.1 DUF960 family protein -
  AYR56_RS03060 (AYR56_03070) - 681563..682228 (-) 666 WP_068226154.1 phosphatase PAP2 family protein -
  AYR56_RS03065 (AYR56_03075) pepF 682574..684382 (-) 1809 WP_068226155.1 oligoendopeptidase F Regulator
  AYR56_RS03070 (AYR56_03080) - 684696..685349 (-) 654 WP_068226298.1 LysM peptidoglycan-binding domain-containing protein -
  AYR56_RS03075 (AYR56_03085) - 685872..687413 (+) 1542 WP_068226156.1 ABC-F family ATP-binding cassette domain-containing protein -
  AYR56_RS03080 (AYR56_03090) - 687613..689052 (+) 1440 WP_068226157.1 C69 family dipeptidase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68367.76 Da        Isoelectric Point: 5.3663

>NTDB_id=175047 AYR56_RS03065 WP_068226155.1 682574..684382(-) (pepF) [Loigolactobacillus backii strain TMW 1.2002]
MSNTQKLPLRKDIPVELTWDLTTVYPTDDDWEAAYKDVQTLTTTVEKLSGTLAANARDLSTGLEQIFDLYRKLEKVYVYA
SLKTNQDNNDPTYQAMSQRAGALVAKVSAQTAFVEPEILAIPEDKLTSYIDENSNLQVYKHYLTQLTAARDHTLSTNEES
LLAGASDVFDGSSQTFNVLNDVDLPFPTVKDAQGNDVQLSQGVYGTLIESTDQAVRQNAFKQLYKVYNQFRNTLASTLIT
NVKMHNFRAQAHHYPSARAAAMAGNHIPESVYTTLVDVVKKHLPLLHRYVALRKKTLKLKQVHMYDMYTPLTGEPTLTYT
YKEAQQEVLKAVKVLGRDYTSVVEEAYEKRWIDVVENKGKTSGAYSSGMYDTNPYILLNWQNNLNSLYTLIHEMGHSVHS
YYTHHNQPYVYGDYAIFVAEIASTTNENLLTDYLLKTQTDPKVRAYVLNYYLDGFKGTIFRQTQFAEFEQFIHTQDANGI
ALTAESMSDYYGKLNKAYYGPDTADDPEIALEWSRIPHFYLNYYVYQYATGFAAATTLADKIVNGKRPERDAYINYLKSG
SSAYPIEIMQAAGVDMTKADYLEKAFTVFEERLTELEKLLAD

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=175047 AYR56_RS03065 WP_068226155.1 682574..684382(-) (pepF) [Loigolactobacillus backii strain TMW 1.2002]
ATGAGTAATACACAAAAATTACCTTTACGCAAAGATATTCCGGTTGAATTAACTTGGGATTTAACCACCGTTTACCCGAC
CGATGACGACTGGGAAGCTGCTTACAAGGATGTTCAAACATTGACTACGACAGTTGAAAAATTGAGTGGTACTTTAGCGG
CCAACGCACGCGACCTGAGTACTGGTCTGGAACAAATTTTTGATCTCTACCGTAAATTAGAAAAAGTTTATGTTTACGCT
AGTTTAAAAACCAACCAGGATAATAATGATCCAACCTATCAGGCAATGTCACAACGTGCAGGTGCGTTGGTGGCCAAAGT
CTCCGCCCAAACCGCCTTTGTCGAACCAGAAATTCTGGCCATTCCTGAAGATAAACTGACTAGTTACATTGACGAAAATA
GTAACCTTCAAGTTTATAAGCACTACTTAACACAACTCACGGCTGCACGCGACCACACCCTATCGACTAACGAGGAAAGT
TTGCTTGCCGGTGCCAGTGATGTCTTTGATGGTTCATCACAAACATTTAACGTTTTAAATGACGTTGATTTACCATTCCC
CACCGTTAAGGATGCTCAGGGTAACGATGTTCAGCTCTCCCAAGGTGTTTATGGTACATTAATCGAATCAACCGACCAGG
CTGTCCGGCAAAATGCTTTTAAACAACTATACAAGGTTTACAATCAATTTCGGAATACGTTGGCTTCAACGCTTATCACG
AATGTTAAAATGCATAATTTTCGTGCTCAGGCCCACCATTATCCAAGTGCCCGTGCCGCCGCAATGGCGGGTAACCACAT
TCCCGAAAGCGTCTATACAACTTTAGTTGATGTTGTTAAAAAACACTTACCTCTTTTACATCGCTACGTTGCATTACGTA
AAAAAACGCTAAAGCTCAAACAGGTCCATATGTACGATATGTACACTCCTTTAACTGGTGAACCGACTTTAACTTATACT
TACAAAGAGGCCCAGCAGGAAGTCTTAAAGGCTGTCAAAGTCTTGGGCCGTGATTATACTAGTGTTGTTGAGGAGGCTTA
TGAAAAGCGCTGGATTGACGTTGTTGAGAATAAAGGTAAGACTAGTGGTGCCTACTCTTCTGGTATGTATGATACCAACC
CATACATTTTGTTGAACTGGCAAAACAATCTGAATAGCCTATATACTTTGATTCACGAAATGGGCCATTCAGTTCATAGT
TATTACACGCATCACAATCAACCCTATGTATACGGTGACTACGCTATTTTTGTTGCCGAAATTGCGTCCACGACTAATGA
AAATTTACTGACTGATTACCTATTAAAAACCCAAACTGATCCAAAGGTACGAGCTTATGTTTTAAACTACTACCTCGATG
GCTTTAAAGGCACAATTTTCCGGCAGACTCAATTTGCTGAATTCGAACAATTTATCCATACTCAGGATGCTAACGGAATT
GCGCTGACGGCCGAAAGTATGTCGGATTACTACGGTAAATTAAACAAGGCATACTACGGTCCTGATACTGCAGACGATCC
AGAGATTGCTTTAGAATGGTCACGAATTCCCCATTTTTATTTAAATTATTACGTTTACCAATACGCTACTGGTTTTGCCG
CAGCGACTACCTTGGCGGATAAAATTGTTAATGGAAAACGACCAGAACGCGATGCTTACATTAACTACCTTAAATCTGGT
AGTTCGGCCTACCCAATTGAAATTATGCAGGCCGCTGGTGTCGACATGACTAAAGCTGATTACCTCGAAAAGGCCTTTAC
TGTTTTTGAAGAACGCCTAACTGAACTAGAAAAATTACTAGCTGACTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A192GZQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.269

98.173

0.503

Multiple sequence alignment