Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AYR55_RS05020 Genome accession   NZ_CP014890
Coordinates   1085953..1086825 (-) Length   290 a.a.
NCBI ID   WP_068224160.1    Uniprot ID   A0A192H3X9
Organism   Loigolactobacillus backii strain TMW 1.1992     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1080953..1091825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYR55_RS05005 (AYR55_05010) xerC 1081466..1082371 (-) 906 WP_068224171.1 tyrosine recombinase XerC -
  AYR55_RS05010 (AYR55_05015) trmFO 1082438..1083748 (-) 1311 WP_068224168.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AYR55_RS05015 (AYR55_05020) topA 1083764..1085842 (-) 2079 WP_068224165.1 type I DNA topoisomerase -
  AYR55_RS05020 (AYR55_05025) dprA 1085953..1086825 (-) 873 WP_068224160.1 DNA-processing protein DprA Machinery gene
  AYR55_RS05025 (AYR55_05030) - 1086885..1087643 (-) 759 WP_068224157.1 ribonuclease HII -
  AYR55_RS05030 (AYR55_05035) ylqF 1087636..1088490 (-) 855 WP_068224154.1 ribosome biogenesis GTPase YlqF -
  AYR55_RS05035 (AYR55_05040) - 1089260..1090129 (-) 870 WP_068224151.1 SDR family oxidoreductase -
  AYR55_RS05040 (AYR55_05045) - 1090271..1090828 (+) 558 WP_068224148.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 31753.50 Da        Isoelectric Point: 8.6493

>NTDB_id=175025 AYR55_RS05020 WP_068224160.1 1085953..1086825(-) (dprA) [Loigolactobacillus backii strain TMW 1.1992]
MQKRELLLQLHLAQGIGLASENHLAKLLAKLPADFDCNHLKTTQLATLAKLTTANRSRFSADFRTEEHLARCCQQGENYL
TIFDAAYPKRLRETYQPPTVLFYQGNLALLQTTCLAIVGARQATSYTPQVLKNFLPSLVKVRCTIMSGLAQGADGYAHQL
TLASGGQTIAVIGTGLDTYYPKQNAQLQAQVAQNGLVLSEYPLGSRPERYHFPQRNRIIAGLCHALCVTEARHHSGSLIT
ANLALQENRSVLAVPGSITAPLSAGCNELILAGAKPALTPRDIWEELQYF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=175025 AYR55_RS05020 WP_068224160.1 1085953..1086825(-) (dprA) [Loigolactobacillus backii strain TMW 1.1992]
ATGCAAAAACGTGAATTACTCTTACAGTTACATTTGGCCCAGGGCATTGGTTTGGCCAGCGAAAACCACTTGGCAAAATT
ATTGGCCAAGTTACCTGCGGATTTTGATTGTAATCATTTGAAAACCACCCAACTGGCTACGTTGGCTAAGTTGACGACCG
CTAACCGCAGCCGCTTTAGTGCTGATTTTCGAACGGAGGAGCACTTAGCTCGTTGCTGTCAACAAGGGGAGAACTATTTG
ACAATTTTTGACGCGGCCTATCCAAAACGACTACGGGAAACTTATCAACCGCCAACTGTCCTGTTTTACCAAGGAAATCT
CGCGCTACTACAGACCACTTGTTTAGCGATTGTTGGTGCGCGGCAAGCCACTAGTTATACGCCGCAAGTACTTAAGAATT
TCTTACCTAGTTTAGTCAAGGTCCGGTGCACAATTATGAGTGGTTTGGCTCAGGGCGCTGACGGTTACGCCCACCAATTG
ACCTTGGCCAGCGGCGGGCAAACAATCGCGGTGATCGGCACTGGGTTAGATACCTATTATCCCAAACAAAATGCGCAGTT
ACAGGCTCAAGTTGCTCAAAACGGGCTAGTTCTTTCTGAATACCCCTTAGGAAGTCGGCCGGAGCGGTACCATTTTCCCC
AGCGTAATCGAATTATCGCCGGTTTATGTCACGCCTTGTGTGTCACTGAGGCCCGGCACCACAGTGGTAGTCTGATTACG
GCCAACTTGGCCTTACAGGAAAATCGTTCCGTTTTGGCCGTTCCCGGTTCGATCACGGCGCCCCTATCTGCTGGGTGTAA
TGAATTAATTTTGGCCGGCGCCAAACCAGCCTTAACGCCCCGAGATATTTGGGAAGAATTACAGTATTTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A192H3X9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

52.027

100

0.531

Multiple sequence alignment