Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AYR53_RS09410 Genome accession   NZ_CP014873
Coordinates   2082013..2082885 (-) Length   290 a.a.
NCBI ID   WP_068224160.1    Uniprot ID   A0A192H3X9
Organism   Loigolactobacillus backii strain TMW 1.1989     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2077013..2087885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYR53_RS09395 (AYR53_09390) xerC 2077526..2078431 (-) 906 WP_068224171.1 tyrosine recombinase XerC -
  AYR53_RS09400 (AYR53_09395) trmFO 2078498..2079808 (-) 1311 WP_068224168.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AYR53_RS09405 (AYR53_09400) topA 2079824..2081902 (-) 2079 WP_068224165.1 type I DNA topoisomerase -
  AYR53_RS09410 (AYR53_09405) dprA 2082013..2082885 (-) 873 WP_068224160.1 DNA-processing protein DprA Machinery gene
  AYR53_RS09415 (AYR53_09410) - 2082945..2083703 (-) 759 WP_068280595.1 ribonuclease HII -
  AYR53_RS09420 (AYR53_09415) ylqF 2083696..2084550 (-) 855 WP_068224154.1 ribosome biogenesis GTPase YlqF -
  AYR53_RS09430 (AYR53_09425) - 2085378..2086247 (-) 870 WP_068280589.1 SDR family oxidoreductase -
  AYR53_RS09435 (AYR53_09430) - 2086389..2086946 (+) 558 WP_068280585.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 31753.50 Da        Isoelectric Point: 8.6493

>NTDB_id=174971 AYR53_RS09410 WP_068224160.1 2082013..2082885(-) (dprA) [Loigolactobacillus backii strain TMW 1.1989]
MQKRELLLQLHLAQGIGLASENHLAKLLAKLPADFDCNHLKTTQLATLAKLTTANRSRFSADFRTEEHLARCCQQGENYL
TIFDAAYPKRLRETYQPPTVLFYQGNLALLQTTCLAIVGARQATSYTPQVLKNFLPSLVKVRCTIMSGLAQGADGYAHQL
TLASGGQTIAVIGTGLDTYYPKQNAQLQAQVAQNGLVLSEYPLGSRPERYHFPQRNRIIAGLCHALCVTEARHHSGSLIT
ANLALQENRSVLAVPGSITAPLSAGCNELILAGAKPALTPRDIWEELQYF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=174971 AYR53_RS09410 WP_068224160.1 2082013..2082885(-) (dprA) [Loigolactobacillus backii strain TMW 1.1989]
ATGCAAAAACGTGAATTACTCTTACAGTTACATTTGGCCCAGGGCATTGGTTTGGCCAGCGAAAACCACTTGGCAAAATT
ATTGGCCAAGTTACCTGCGGATTTTGATTGTAATCATTTGAAAACCACCCAACTGGCTACGTTGGCTAAGTTGACGACCG
CTAACCGCAGCCGCTTTAGTGCTGATTTTCGAACGGAGGAGCACTTAGCTCGTTGCTGTCAACAAGGGGAGAACTATTTG
ACAATTTTTGACGCGGCCTATCCAAAACGACTACGGGAAACTTATCAACCGCCAACTGTCCTGTTTTACCAAGGAAATCT
CGCGCTACTACAGACCACTTGTTTAGCGATTGTTGGTGCGCGGCAAGCCACTAGTTATACGCCGCAAGTACTTAAGAATT
TCTTACCTAGTTTAGTCAAGGTCCGGTGCACAATTATGAGTGGTTTGGCTCAGGGCGCTGACGGTTACGCCCACCAATTG
ACCTTGGCCAGCGGCGGGCAAACAATCGCGGTGATCGGCACTGGGTTAGATACCTATTATCCCAAACAAAATGCGCAGTT
ACAGGCTCAAGTTGCTCAAAACGGGCTAGTTCTTTCTGAATACCCCTTAGGAAGTCGGCCGGAGCGGTACCATTTTCCCC
AGCGTAATCGAATTATCGCCGGTTTATGTCACGCCTTGTGTGTCACTGAGGCCCGGCACCACAGTGGTAGTCTGATTACG
GCCAACTTGGCCTTACAGGAAAATCGTTCCGTTTTGGCCGTTCCCGGTTCGATCACGGCGCCCCTATCTGCTGGGTGTAA
TGAATTAATTTTGGCCGGCGCCAAACCAGCCTTAACGCCCCGAGATATTTGGGAAGAATTACAGTATTTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A192H3X9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

52.027

100

0.531

Multiple sequence alignment